Transcription Factor
| Accessions: | T23741 (AthalianaCistrome v4_May2016), O81821 (JASPAR 2024) |
| Names: | AT5G16820, HSF3, T23741;, AtHsf-18, AtHsfA1b, Heat shock factor protein 3, Heat shock transcription factor 3, Heat stress transcription factor A-1b, HFA1B_ARATH, HSF 3, HSTF 3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:HSF |
| Length: | 481 |
| Pfam Domains: | 28-120 HSF-type DNA-binding |
| Sequence: (in bold interface residues) | 1 MESVPESVPSPNSNTPSIPPPVNSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAP 60 61 EFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPS 120 121 HVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQ 180 181 NVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQE 240 241 NRGDNVANGLNRQIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSST 300 301 SVDNGNPSSRVSGVTLAEFSPNTVQSATNQVPEASLAHHPQAGLVQPNIGQSPAQGAAPA 360 361 DSWSPEFDLVGCETDSGECFDPIMAVLDESEGDAISPEGEGKMNELLEGVPKLPGIQDPF 420 421 WEQFFSVELPAIADTDDILSGSVENNDLVLEQEPNEWTRNEQQMKYLTEQMGLLSSEAQR 480 481 K |
| Interface Residues: | 72, 73, 78, 80, 81, 82, 84, 85, 116 |
| 3D-footprint Homologues: | 5hdn_C, 5d5w_B, 3hts_B, 5d5v_B, 7dci_A |
| Binding Motifs: | M0450 GAAgcTTCTAGA MA2019.1 taGAArCTTCta MA2019.2 GAArCTTC |
| Binding Sites: | MA2019.2.13 / MA2019.2.14 / MA2019.2.18 / MA2019.2.19 / MA2019.2.3 / MA2019.2.4 MA2019.1.1 MA2019.1.10 MA2019.1.11 MA2019.1.12 MA2019.1.13 MA2019.1.14 MA2019.1.15 MA2019.1.16 MA2019.1.17 MA2019.1.18 MA2019.1.19 MA2019.1.2 MA2019.1.20 MA2019.1.3 MA2019.1.4 MA2019.1.5 MA2019.1.6 MA2019.1.7 MA2019.1.8 MA2019.1.9 MA2019.2.1 / MA2019.2.11 / MA2019.2.2 MA2019.2.10 / MA2019.2.6 MA2019.2.12 MA2019.2.15 / MA2019.2.9 MA2019.2.16 / MA2019.2.17 / MA2019.2.5 / MA2019.2.8 MA2019.2.20 MA2019.2.7 |
| Publications: | Huang YC, Niu CY, Yang CR, Jinn TL. The Heat Stress Factor HSFA6b Connects ABA Signaling and ABA-Mediated Heat Responses. Plant Physiol 172:1182-1199 (2016). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.