Transcription Factor
| Accessions: | AuxinResponseFactor29 (EEADannot 2023-12-22) |
| Names: | ARF29, GRMZM2G086949 |
| Organisms: | Zea mays |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:ARF |
| Length: | 959 |
| Pfam Domains: | 144-258 B3 DNA binding domain 283-365 Auxin response factor 849-945 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MMASSQEKATSGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVY 60 61 YFPQGHSEQVAATTKKIPNSRIPNYPSLPPQLLCQVHNITLHADKETDEIYCQMTLQPLH 120 121 SETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLVRASAQT 180 181 RVFNPQDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDS 240 241 VLFIRDEKSQLLVGVRRATRQQPALSSSVLSTDSMHIGVLAAAAHAASSGGSFTIYYNPR 300 301 TSPSPFVIPLARYNKATYLQPSVGMRFAMMFETEESSKRRCTGAIVGISDYDPMRWPNSK 360 361 WRNLQVEWDEHGYGERPERVSIWDIETPENMVFSSPLNSKRQCLPSYGVPGLQIGSVNMS 420 421 SIPRAQGNPIGNLQHMPGMGSELALLLLNQSGQNIGSPIACQQSSFSSIIQNAKHSYFPP 480 481 KTFGASTASMKQESMPSTEAQPQLNALGIQRSDRVSCEVQTASDSNPAQEMSVKPRAPRS 540 541 TDSHSSQSISDQNSKGEPRTKTRRSKKSSYQKTISDKSELCSVPSQICDDKKHGSEPRLA 600 601 DCEAEQATCGNNEESSGALTHGDFAGELQVQQQVEQHELLAPPKIESSKSPDGGKSVSSF 660 661 PNQGCIPQFFEGLDWMIPPSYYQDSNGIQSVTASDNIFNPSEGIPSTMNADALDAFQTSC 720 721 LSECFPSSIQEFIGSPDINTLAFMSPEMQQLDAGSNLPSTSNSYVQMSFSEESHSASLSG 780 781 LHMEAIHINSSSCSQPLATGSFDAGAFPKLSNIRECQPLPLQEIHTSSMGTPSCSMDAAA 840 841 EYGTDRSAKQMKPPVRTYTKVQKLGSVGRCIDVTRFRDYHELRSAIACMFGLQGKLEHPG 900 901 SSDWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGVHVLNDCIQIA |
| Interface Residues: | 151, 156, 157, 158, 159, 160, 161, 214, 216, 217, 219 |
| 3D-footprint Homologues: | 6sdg_B, 6ycq_A, 7et6_A, 3hqf_A |
| Binding Motifs: | EEAD0035 TGTCkg |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.