Transcription Factor
| Accessions: | Q9FR97 (JASPAR 2024), T12843 (AthalianaCistrome v4_May2016) |
| Names: | AtMYB65, Myb-related protein 65, MYB65_ARATH, Transcription factor MYB65, AT3G11440, MYB65, T12843; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 553 |
| Pfam Domains: | 43-90 Myb-like DNA-binding domain 46-106 Myb-like DNA-binding domain 96-139 Myb-like DNA-binding domain 100-143 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSYTTATADSDDGMHSSIHNESPAPDSISNGCRSRGKRSVLKKGPWTSTEDGILIDYVKK 60 61 HGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLKKGAFSQEEEQLIVEMHAKMGNKWAQ 120 121 MAEHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEIYVDDLHWSEEYTKSNIIRVDRRRR 180 181 HQDFLQLGNSKDNVLFDDLNFAASLLPAASDLSDLVACNMLGTGASSSRYESYMPPILPS 240 241 PKQIWESGSRFPMCSSNIKHEFQSPEHFQNTAVQKNPRSCSISPCDVDHHPYENQHSSHM 300 301 MMVPDSHTVTYGMHPTSKPLFGAVKLELPSFQYSETSAFDQWKTTPSPPHSDLLDSVDAY 360 361 IQSPPPSQVEESDCFSSCDTGLLDMLLHEAKIKTSAKHSLLMSSPQKSFSSTTCTTNVTQ 420 421 NVPRGSENLIKSGEYEDSQKYLGRSEITSPSQLSAGGFSSAFAGNVVKTEELDQVWEPKR 480 481 VDITRPDVLLASSWLDQGCYGIVSDTSSMSDALALLGGDDIGNSYVTVGSSSGQAPRGVG 540 541 SYGWTNMPPVWSL |
| Interface Residues: | 43, 78, 79, 80, 81, 83, 84, 87, 88, 89, 130, 131, 134, 135, 138, 139, 140 |
| 3D-footprint Homologues: | 1w0t_A, 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 6kks_A, 1mse_C, 3zqc_A |
| Binding Motifs: | M0533 / MA1177.1 ayyrTAACcGhmw M0508 aTAACcGwmwmhrwa MA1177.2 TAACcGhm |
| Binding Sites: | MA1177.2.20 MA1177.2.8 MA1177.1.1 MA1177.1.10 / MA1177.1.3 MA1177.1.11 MA1177.1.12 / MA1177.1.13 MA1177.1.14 / MA1177.1.16 MA1177.1.15 MA1177.1.17 MA1177.1.18 MA1177.1.19 MA1177.1.2 MA1177.1.20 MA1177.1.4 / MA1177.1.8 MA1177.1.5 MA1177.1.6 MA1177.1.7 MA1177.1.9 MA1177.2.1 MA1177.2.10 MA1177.2.11 MA1177.2.12 MA1177.2.13 MA1177.2.14 MA1177.2.15 MA1177.2.16 MA1177.2.17 MA1177.2.18 MA1177.2.19 MA1177.2.2 MA1177.2.3 MA1177.2.4 MA1177.2.5 MA1177.2.6 MA1177.2.7 MA1177.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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