Transcription Factor

						

			
Accessions: T057853_1.02 (CISBP 1.02)

			
Names: CG4360, T057853_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 385
Pfam Domains:   143-164 Zinc finger, C2H2 type
  143-162 C2H2-type zinc finger
  143-164 C2H2-type zinc finger
  157-180 Zinc-finger double domain
  169-188 C2H2-type zinc finger
  170-192 Zinc finger, C2H2 type
  170-192 C2H2-type zinc finger
  185-208 Zinc-finger double domain
  197-221 C2H2-type zinc finger
  198-220 C2H2-type zinc finger
  198-220 Zinc finger, C2H2 type
  282-304 C2H2-type zinc finger
  282-304 Zinc finger, C2H2 type
  282-297 C2H2-type zinc finger
  300-320 Zinc-finger double domain
  309-330 C2H2-type zinc finger
  310-332 Zinc finger, C2H2 type
  310-332 C2H2-type zinc finger
  325-348 Zinc-finger double domain
  337-360 C2H2-type zinc finger
  338-360 Zinc finger, C2H2 type
  338-360 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MHLNHATAATAAMANYQHYQLPASHGGGGGGGGGGGGGGGSNGGSGPGPNSGQQQPTTLA   60
  61 SLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTTANSGGGGGGSHTPISPM  120
 121 KQEVQSVISEEEVVVDDPRKKKQCHVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFR  180
 181 QISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPQTGS  240
 241 GKHRKSQMHQAYQQQHQRVQISKTLYSGSYSSPAAEELVKPFQCSVCKRRFPQLSTLHNH  300
 301 ERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHLKTH  360
 361 THQIAPGGVGGAGGGGGAVTATAFI
Interface Residues: 122, 124, 152, 153, 154, 155, 156, 158, 159, 180, 181, 182, 183, 184, 186, 187, 188, 209, 210, 211, 212, 213, 214, 215, 216, 219, 226, 228, 229, 232, 237, 240, 243, 244, 246, 247, 248, 249, 250, 251, 252, 254, 255, 263, 264, 265, 266, 269, 272, 292, 293, 294, 295, 296, 299, 305, 319, 321, 322, 323, 324, 326, 327, 331, 334, 335, 348, 349, 350, 351, 352, 353, 355
3D-footprint Homologues: 2gli_A, 6jnm_A, 7w1m_H, 2kmk_A, 7ysf_A, 8ssq_A, 6u9q_A, 4x9j_A, 8ssu_A, 1g2f_F, 2lt7_A, 6a57_A, 3uk3_C, 8cuc_F, 7y3l_A, 1llm_D, 5k5i_A, 5v3j_F, 2drp_D, 1f2i_J, 5k5l_F, 2wbs_A, 8gn3_A, 4m9v_C, 7y3m_I, 1tf3_A, 1tf6_A, 5yj3_D, 5yel_A, 6ml4_A, 7n5w_A, 5ei9_F, 2jpa_A, 5kl3_A, 6blw_A, 6e94_A, 5kkq_D, 1ubd_C, 8h9h_G, 7txc_E, 1yuj_A
Binding Motifs: M4865_1.02 skbTTGTTGTTGk
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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