Transcription Factor
| Accessions: | T091718_1.02 (CISBP 1.02) |
| Names: | Ci-Hox12, T091718_1.02; |
| Organisms: | Ciona intestinalis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 484 |
| Pfam Domains: | 391-447 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MTAKVFSGDYHYNMSFAFGDTTSEQEADSLFSSAGPSQENITQPEEPLQVPAKVTSCSSV 60 61 HVTEQLAYFNPMRVNDSYPMSEHVPSYGRDVSQQPLKKWESYSAKGLTPTLATPAAKTDV 120 121 QQSTYAAMPKNGKPAPSSLTEACGVLRGSEYERSTIPYYGTSAHVRQNIGKSDNGIVSAL 180 181 RTSPIIRSPIVTERENGRSLSTSGSDSGAHGNLVQSAPPRTISDLPNLNSGYPSTDNPFR 240 241 CLPDSGDAFKGLTACGSMLSQSTCQEQRYTLPHSTIHTEHPFDHPGHSSMSVTYANDSLY 300 301 FGSMDHYGSQLSARQYPQFVTHPYYPHYPAPSLHHTDFATSTIPNQVVAHDHVALLPHHH 360 361 HPAAAAYSHPYQTVLPGQHYPVDVTRHGAQRRRRRPYTKYQLSELEREFGANEFISREMR 420 421 EQIAVRVGLNDRQVKIWFQNRRMKKKRMQHRGEQSVEDEDQLGMTEEPDLQLGAVPHCEN 480 481 YMTG |
| Interface Residues: | 391, 392, 393, 394, 395, 396, 432, 433, 435, 436, 439, 440, 442, 443, 444, 447 |
| 3D-footprint Homologues: | 8pmf_A, 5zfz_A, 1puf_A, 1ig7_A, 3d1n_M, 8ejp_B, 6a8r_A, 1fjl_B, 3cmy_A, 6m3d_C, 1jgg_B, 3lnq_A, 1nk2_P, 1zq3_P, 2lkx_A, 1mnm_C, 2ld5_A, 7q3o_C, 6es3_K, 2hdd_A, 1b72_A, 4cyc_A, 2r5y_A, 5flv_I, 2hos_A, 9b8u_A, 5zjt_E, 1puf_B, 8ik5_C, 7psx_B, 5hod_A, 3a01_E, 8osb_E, 1au7_A, 5jlw_D, 3rkq_B, 8eml_B, 4xrs_G, 1k61_B, 1le8_A, 7xrc_C, 2xsd_C, 1e3o_C, 8g87_X, 8bx1_A, 1du0_A, 4qtr_D, 4xrm_B, 1o4x_A |
| Binding Motifs: | M0879_1.02 TTwAYkAY |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.