Transcription Factor

						

			
Accessions: T060958_1.02 (CISBP 1.02)

			
Names: NCU04848, T060958_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 929
Pfam Domains:     35-56 C2H2-type zinc finger
    49-74 Zinc-finger double domain
    62-87 Zinc finger, C2H2 type
    62-87 C2H2-type zinc finger
  377-622 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MLSQHSVAVEAAGSLPGSHAHEAGEARPQKPKNLPCKFCAKRFRRVEHVQRHERTHTKEK   60
  61 PFECEWEGCGKRFGRRDLLVRHEKLCHLNDGASNNNHNASSSSNSSNNNSNNKNANHKDG  120
 121 NKRRKTSSSSVVSPPSLEHHTDIQMKTQHRPATQSQFPNGSMQPSMASSMPSDSRLLSRG  180
 181 PACNLDLLSDAATHLASGGEVNNLQHMQPTMMQGLSQQQPDLPPAKSYQDSMSFANHNPK  240
 241 QEPGAMNGGYSTQPPGSEFDPLFMDDYASSHAFPQLFDGEAPFSMWSRPGLENGLRGGPS  300
 301 KPNSTFPSRFPSVQPELRDGPDGSARLHADTMKAANLTISAKDHSVMKAKLDEFSSVLPS  360
 361 NFVFPSRHTLQRFLEGYFTGFHDHLPFIHLPTFLPVEASPELLLAITSVGAQYRFERSRG  420
 421 HALWYAAKAVALEQIRRRNSYEVQGLLPTSAAYSPHSTRPSPSSGFRHSYPSVHRDRPVT  480
 481 QDTHREPYSPNTPQSRLETIQAMLLLFAIGLWGAKAILHEALSLQSQLALLVREEGLQGE  540
 541 PNQAPDWESWVRTESATRTKLIAYCFFNLCSVAYNTVPLLLTSEVQLYLPNATRLWRAGD  600
 601 ANQWQEVRQTSPNTEVPLPIAFSRLFNRGIQGPPPQLTSLGNYVLIHAILQHIFLLKQAT  660
 661 FATSLGMQRALRGQENEDICQAIRVWFHSVEQQRHVEGFDTWDPVDSNSVALHRVAFIRL  720
 721 NTDLNASRHLESRAYNAAGRAYAEAPLLLRGMLLNRAVYQAIQALSPLVKMGVNYVARTK  780
 781 SPEWGVQHSMSNNECAVLISKWLLTLASIGPTDPPITSEESQLLEGLRRMLDETEFAVPI  840
 841 DPAIGGGAQQDHNHQQRSTDGPATDPTNLRQLAAAVVRLWAETFRGTHIFEFVDMMGSGL  900
 901 ETYAYHIENPRDRTPLAMGRMGNNHQMQM
Interface Residues: 10, 12, 14, 17, 21, 24, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 55, 74, 75, 76, 77, 78, 79, 81, 82
3D-footprint Homologues: 7n5w_A, 8h9h_G, 5yel_A, 8gn3_A, 7w1m_H, 7y3l_A, 6jnm_A, 1g2f_F, 3uk3_C, 2kmk_A, 8cuc_F, 6u9q_A, 2drp_D, 5kkq_D, 2lt7_A, 4x9j_A, 2gli_A, 1f2i_J, 5kl3_A, 7txc_E, 5ei9_F, 2jpa_A, 7ysf_A, 6ml4_A, 5v3j_F, 1ubd_C, 8ssq_A, 6blw_A, 5k5i_A, 1llm_D, 4m9v_C, 6e94_A, 1tf3_A, 7y3m_I, 6a57_A, 5yj3_D, 2wbs_A, 1tf6_A
Binding Motifs: M0474_1.02 rtkyGGGGta
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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