Transcription Factor

						

			
Accessions: T135737_1.02 (CISBP 1.02)

			
Names: egl-38, T135737_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Paired box
Length: 289
Pfam Domains:    30-153 'Paired box' domain
Sequence: 
(in bold interface residues)		   1 MEPIWRNYPYPTYPGHHNFQFDPLLSDGSHTGVNQLGGVFVNGRPLADTVRAQIVEMSQH   60
  61 GTRPCDISRQLKVSHGCVSKILGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANP  120
 121 TMFAWEIRQKLIEDQICGEENVPSVSSINRIVRNKSFMAQLAAPTSVTSSAARPSSATSH  180
 181 HQRSPPRGVQQHMQQSTSVQQLQQLQLTSAATVNSLMTPPAFAMPGTAYSINGLLGTLPQ  240
 241 PSLLDDKFTNLSTQSADMSLVYSTGLVGEHDWTMRTPMVILPQNYCGQL
Interface Residues: 42, 74, 75, 77, 79, 80, 96, 99, 102, 123, 144, 145, 146, 147, 149, 150, 153
3D-footprint Homologues: 1pdn_C, 6pax_A, 1k78_A, 7uy7_A
Binding Motifs: M1498_1.02 ACCGTGAyCAC
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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