Transcription Factor
| Accessions: | T084527_1.02 (CISBP 1.02) |
| Names: | gtaE, T084527_1.02; |
| Organisms: | Dictyostelium discoideum |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:GATA |
| Length: | 952 |
| Pfam Domains: | 241-275 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MDYQLHEGKQISQEFPTDISTTKSSDLKSRKTDSPSIQRTHEFVNFSVFPIVNTNEIMNV 60 61 DIKHFSPDLKCPTSPNIFLQPLTTTPNTTPNTSTTIDSNTEINPIEIQLQSPLLFQPEHL 120 121 SPQTLKTTIPTFSIPTYPTPLNTKFQSSPPPPPPPPAATTTTTITTTTTTSAGNSTTKNN 180 181 NNNNNNNNNNNGKSPKQFQDVLIPVTSSGKDGALYTVLENVPIKRTHRRRSANIDKDSLK 240 241 CYQCNTSNTPEWRKGPEGPATLCNACGLAYAKKQKLTKNNIKFNQSTNVNNNTNNTITQL 300 301 NQQINNQGLPNLTSTTTTSNNTAAAVNITTPSKRNNKYNTHRSKVFGEVAPSIVYTNGTL 360 361 NNVGTPVSDTKKSHTFHEYMTPSNSFFTGKPIKTTKTKPKPKSKSKPGKITHTKHEQPQL 420 421 NEQVQAIMEKNNLLSSSGGSGGAGSSSSSCGTSLNSSLGSSSGTITNSGGGSSGGGGGNL 480 481 FSNQQLGFTCINNNVSNNNSNNNINNNDKQIQQQIQQVQQQVHQQVQQQLQQQQQVQQQQ 540 541 QQINQEPFLNQQNHYYQNIFQNVSTGNQNCAINTNGGFPQFESPMDIFPYNNNTTNCTQD 600 601 SNGFVPNLANFEMQGNVLYNSSGSPSSLGQYVIQNNSFSGPNDQNPYVPSVSLNSNKTTN 660 661 IKNNNNNKKNSKNKNNKNNKNNNNNTKINNHHINNNKNNVNTNQTIIKENNSQKQHQQQQ 720 721 QQQQQQQEQQKQQQEQQKQQEEQQQNLSINNSNQTNENEILGTTTTTTTSTATIITSQVP 780 781 MNLSPNSDDNQSSSNYSTLSDSGSSPTDSFSGLSVNTPHPNCDSFSSSINNGSNCGSDIE 840 841 TIESPLQMSTDVLTINNCSSNRTTATNNNINNNNNNNNNNNNNNNKCSIKDDTFNLLTNS 900 901 NLDSFGIIDCINGSSTNTNSFFMETPLLINDEDLLSSSNLTSSSELLPHSFV |
| Interface Residues: | 250, 251, 253, 264, 268, 272 |
| 3D-footprint Homologues: | 1gat_A, 3dfx_B, 4gat_A |
| Binding Motifs: | M0773_1.02 yAGATcc |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.