Transcription Factor

						

			
Accessions: T057695_1.02 (CISBP 1.02)

			
Names: sob, T057695_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 578
Pfam Domains:   395-417 Zinc finger, C2H2 type
  395-417 C2H2-type zinc finger
  395-412 C2H2-type zinc finger
  409-433 Zinc-finger double domain
  423-445 Zinc finger, C2H2 type
  423-445 C2H2-type zinc finger
  423-443 C2H2-type zinc finger
  437-460 Zinc-finger double domain
  451-474 C2H2-type zinc finger
  467-489 Zinc-finger double domain
  478-497 C2H2-type zinc finger
  479-501 Zinc finger, C2H2 type
  479-501 C2H2-type zinc finger
  480-498 Zinc-finger of C2H2 type
  493-517 Zinc-finger double domain
  507-517 C2H2-type zinc finger
  507-529 Zinc finger, C2H2 type
  507-530 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MEAVKHLSAAAAAAAAAATCSDSPAKAAASPAASSDIAEALGELKASATAAASSASKAAT   60
  61 SKHHSNNNHKPSAAATATAAHKKSESCNSNGNKCTAATSPIGSKTSNAAMAAATATAAAA  120
 121 TNDLAAAAAVVLSLQGTMVSSLQQAALLPANSAAAAALNLQALESYLALQRLTGKSDVFR  180
 181 FSNSNTGSSNSNNATTCNSSSSEADNNALPSLIDIANIELKSSCSSSSSGEPPLTAATAS  240
 241 AAATSSPSSNNSNSTSTPTTSKCVPLPSIGTVSAAVAAAAAAAAAAASQQAALDCATAAE  300
 301 LAAECDLPLLDGEDALSFEAGDLDSSYGSFMFNPSAFSQAETDSALHSLQATMYQDKMSV  360
 361 ISGAAGGVGAGAVGGLEEAGSSAAAAAAQRSKKQFICKFCNRQFTKSYNLLIHERTHTDE  420
 421 RPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCAECGKGFCQSRTLAVHKILHMEESPHK  480
 481 CPVCNRSFNQRSNLKTHLLTHTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSAGVGGVVG  540
 541 GNLSDPFGSGSSSSSELGLPTGSASTAASSRDLVAVSD
Interface Residues: 405, 406, 407, 408, 409, 411, 412, 413, 414, 415, 418, 423, 433, 434, 435, 436, 437, 438, 439, 440, 441, 444, 461, 462, 463, 464, 465, 467, 468, 470, 472, 476, 489, 490, 491, 492, 493, 494, 495, 496, 500, 517, 518, 519, 520, 521, 523, 524
3D-footprint Homologues: 3uk3_C, 8cuc_F, 7y3l_A, 5v3j_F, 7n5w_A, 1f2i_J, 6wmi_A, 5ei9_F, 7w1m_H, 5und_A, 1g2f_F, 1tf6_A, 6ml4_A, 2gli_A, 1llm_D, 6blw_A, 5kkq_D, 6u9q_A, 5yel_A, 4x9j_A, 5kl3_A, 7eyi_G, 4m9v_C, 8h9h_G, 7ysf_A, 2lt7_A, 7y3m_I, 2i13_A, 6e94_A, 2jpa_A, 1ubd_C, 2kmk_A, 1tf3_A, 8ssq_A, 5k5i_A, 2wbs_A, 6jnm_A, 1mey_C, 6a57_A, 1yuj_A, 2drp_D, 8gn3_A, 7txc_E, 5yj3_D
Binding Motifs: M5203_1.02 bwammmCAGWAGC
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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