Transcription Factor

						

			
Accessions: Q4H3T1 (JASPAR 2024)

			
Names: Q4H3T1_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3T1
Length: 394
Pfam Domains:   217-272 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MLCYAIDQQKSSIGQPTNMYRNPTPDPNPSPTSNQGFFQTYPPKEDHGRYPVPNYGIPQP   60
  61 HASTADPFYPSSLGGEYGSQFPAPPPPHLDAANWGPPVTYSGANFAPMMNSTWDMNSNFH  120
 121 PTHHPIISSAGPTYQLPTNLSPTSAVNGDGSPGSVPTTLTGIECFSTPPEMHGAPGLPPL  180
 181 HASQIPPAQRRPYEWISKNAYQNTQTQQVGKTRTKDKYRVVYSDHQRLELEKEFRFSRYI  240
 241 TIRRKAELAGLLCLSERQIKIWFQNRRAKERKATKKTGEPSKDFDKDEAEAADDDVTDHP  300
 301 MTSSPIQHMQSGCQYIPPDLSRDHGILESRDGGIAHASFYEMPPHGTMNYTQLNPMDIKP  360
 361 IIPTEAHRSLSSTSDDVTHGQPVMTSSHGNGNDV
Interface Residues: 202, 203, 206, 216, 217, 218, 219, 257, 258, 260, 261, 264, 265, 267, 268, 269, 271, 272
3D-footprint Homologues: 5zfz_A, 1puf_A, 8pmf_A, 1zq3_P, 2lkx_A, 1jgg_B, 3lnq_A, 1nk2_P, 7q3o_C, 6es3_K, 2ld5_A, 5zjt_E, 4cyc_A, 8osb_E, 1ig7_A, 7psx_B, 3cmy_A, 2hdd_A, 8ejp_B, 6a8r_A, 2r5y_A, 5jlw_D, 2hos_A, 8eml_B, 4xrs_G, 9b8u_A, 1au7_A, 3rkq_B, 8ik5_C, 1fjl_B, 5flv_I, 3a01_E, 1le8_A, 1e3o_C, 2xsd_C, 7xrc_C, 8bx1_A, 1b72_A, 1o4x_A, 5hod_A, 1le8_B, 1du0_A, 4qtr_D, 1mnm_C, 1puf_B, 1k61_B, 6m3d_C
Binding Motifs: UN0444.1 wwwwwdwTTTATtGckkkdwdd
MA2110.1 TTTATtGc
			
Publications: Wada S, Tokuoka M, Shoguchi E, Kobayashi K, Di Gregorio A, Spagnuolo A, Branno M, Kohara Y, Rokhsar D, Levine M, Saiga H, Satoh N, Satou Y. A genomewide survey of developmentally relevant genes in Ciona intestinalis. II : (Genes). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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