Transcription Factor
| Accessions: | UP00033A (UniPROBE 20160601) |
| Names: | Another partner for ARF 1, Apa1, D12Ertd748e, MGC38535, Zfp410, zinc finger protein 410, Zinc finger protein APA-1, Znf410 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q8BKX7 |
| Description: | zinc finger protein 410: Mus musculus HCM3688 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence |
| Length: | 173 |
| Pfam Domains: | 17-40 Zinc finger, C2H2 type 17-40 C2H2-type zinc finger 32-58 Zinc-finger double domain 46-70 Zinc finger, C2H2 type 46-71 C2H2-type zinc finger 63-89 Zinc-finger double domain 76-100 Zinc finger, C2H2 type 78-100 C2H2-type zinc finger 92-118 Zinc-finger double domain 108-130 Zinc finger, C2H2 type 108-130 C2H2-type zinc finger 122-146 Zinc-finger double domain 136-158 Zinc finger, C2H2 type 136-159 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 GQPKDSGPLPQAEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNERSFICPAEGCGKSFYVL 60 61 QRLKVHMRTHNGEKPFMCHESGCGKQFTTAGNLKNHRRIHTGEKPFLCEAQGCGRSFAEY 120 121 SSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQLGTTGSQEQDQT |
| Interface Residues: | 28, 29, 31, 32, 35, 58, 59, 61, 62, 64, 65, 67, 68, 71, 89, 90, 91, 92, 94, 95, 98, 99, 118, 119, 120, 121, 122, 124, 125, 147, 148, 149, 150, 151, 152, 153, 154, 156, 157 |
| 3D-footprint Homologues: | 5v3j_F, 1tf6_A, 7w1m_H, 1ubd_C, 1tf3_A, 7n5w_A, 8cuc_F, 7y3l_A, 2gli_A, 8ssq_A, 7txc_E, 8ssu_A, 7y3m_I, 7ysf_A, 6e94_A, 2lt7_A, 2jpa_A, 2kmk_A, 6u9q_A, 8h9h_G, 2drp_D, 8gn3_A, 8gh6_A, 8hig_A |
| Binding Motifs: | UP00033A_1 drkwATGGGATGkmdwm UP00033A_2 yymyyCCkCCCCwhayw |
| Binding Sites: | ACATCCCA ACCATCCC AGGGATGG ATATCCCA ATCCCATA ATCCCATG ATGGGATA ATTATGGG CATCCCAA CATCCCAC CATCCCAG CCATCCCA CCCATCCC CTATCCCA GACATCCC GCATCCCA GCCATCCC GGGATGGA GGGATGTA CCATAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.