Transcription Factor

						

			
Accessions: UP00033A (UniPROBE 20160601)

			
Names: Another partner for ARF 1, Apa1, D12Ertd748e, MGC38535, Zfp410, zinc finger protein 410, Zinc finger protein APA-1, Znf410
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Uniprot: Q8BKX7
Description: zinc finger protein 410: Mus musculus HCM3688 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence
Length: 173
Pfam Domains:     17-40 C2H2-type zinc finger
    17-40 Zinc finger, C2H2 type
    32-58 Zinc-finger double domain
    46-70 Zinc finger, C2H2 type
    46-71 C2H2-type zinc finger
    63-89 Zinc-finger double domain
   76-100 Zinc finger, C2H2 type
   78-100 C2H2-type zinc finger
   92-118 Zinc-finger double domain
  108-130 Zinc finger, C2H2 type
  108-130 C2H2-type zinc finger
  122-146 Zinc-finger double domain
  136-158 Zinc finger, C2H2 type
  136-159 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 GQPKDSGPLPQAEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNERSFICPAEGCGKSFYVL   60
  61 QRLKVHMRTHNGEKPFMCHESGCGKQFTTAGNLKNHRRIHTGEKPFLCEAQGCGRSFAEY  120
 121 SSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQLGTTGSQEQDQT
Interface Residues: 28, 29, 31, 32, 35, 58, 59, 60, 61, 62, 64, 65, 67, 68, 71, 88, 89, 90, 91, 92, 93, 94, 95, 96, 98, 99, 118, 119, 120, 121, 122, 123, 124, 125, 126, 147, 148, 149, 150, 151, 152, 153, 154, 157
3D-footprint Homologues: 5v3j_F, 1tf6_A, 6wmi_A, 7w1m_H, 2i13_A, 1ubd_C, 1tf3_A, 6jnm_A, 8cuc_F, 7y3l_A, 7n5w_A, 8ssu_A, 5yel_A, 7txc_E, 5kl3_A, 5ei9_F, 8ssq_A, 6ml4_A, 2gli_A, 5kkq_D, 7eyi_G, 7y3m_I, 6e94_A, 7ysf_A, 6a57_A, 2lt7_A, 2jpa_A, 6u9q_A, 4x9j_A, 1g2f_F, 5yj3_D, 5und_A, 2kmk_A, 1mey_C, 6blw_A, 8h9h_G, 4m9v_C, 3uk3_C, 2wbs_A, 1llm_D, 5k5i_A, 1f2i_J, 8gn3_A, 8gh6_A
Binding Motifs: UP00033A_1 drkwATGGGATGkmdwm
UP00033A_2 yymyyCCkCCCCwhayw
Binding Sites: ACATCCCA
ACCATCCC
AGGGATGG
ATATCCCA
ATCCCATA
ATCCCATG
ATGGGATA
ATTATGGG
CATCCCAA
CATCCCAC
CATCCCAG
CCATCCCA
CCCATCCC
CTATCCCA
GACATCCC
GCATCCCA
GCCATCCC
GGGATGGA
GGGATGTA
CCATAATA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.