Transcription Factor
| Accessions: | T153981_1.02 (CISBP 1.02), Q9SA80 (JASPAR 2024), T04491 (AthalianaCistrome v4_May2016) |
| Names: | T153981_1.02;, WRKY14, AR411, Probable WRKY transcription factor 14, WRK14_ARATH, WRKY DNA-binding protein 14, AT1G30650, T04491; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:WRKY, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 430 |
| Pfam Domains: | 217-275 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MCSVSELLDMENFQGDLTDVVRGIGGHVLSPETPPSNIWPLPLSHPTPSPSDLNINPFGD 60 61 PFVSMDDPLLQELNSITNSGYFSTVGDNNNNIHNNNGFLVPKVFEEDHIKSQCSIFPRIR 120 121 ISHSNIIHDSSPCNSPAMSAHVVAAAAAASPRGIINVDTNSPRNCLLVDGTTFSSQIQIS 180 181 SPRNLGLKRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYY 240 241 RCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNALAGSTRSSTSSSSNPNPS 300 301 KPSTANVNSSSIGSQNTIYLPSSTTPPPTLSSSAIKDERGDDMELENVDDDDDNQIAPYR 360 361 PELHDHQHQPDDFFADLEELEGDSLSMLLSHGCGGDGKDKTTASDGISNFFGWSGDNNYN 420 421 NYDDQDSRSL |
| Interface Residues: | 223, 224, 225, 227, 228, 239 |
| 3D-footprint Homologues: | 6j4e_B, 6j4f_F, 6j4g_B, 6ir8_A, 7z0u_A |
| Binding Motifs: | M1678_1.02 wrGTCAAcgs M0817 / MA1314.1 aAAAGTCAACgmy M0809 aAAAGTCAACGmt MA1314.2 AAAGTCAACg |
| Binding Sites: | MA1314.1.6 MA1314.1.11 MA1314.1.12 MA1314.1.2 / MA1314.1.3 MA1314.1.13 MA1314.1.15 MA1314.1.16 MA1314.1.5 MA1314.1.18 MA1314.1.1 MA1314.1.4 MA1314.1.8 MA1314.1.9 MA1314.1.10 MA1314.1.14 MA1314.1.17 / MA1314.1.19 MA1314.1.20 MA1314.1.7 MA1314.2.13 MA1314.2.15 MA1314.2.17 MA1314.2.19 MA1314.2.6 MA1314.2.5 MA1314.2.11 MA1314.2.18 MA1314.2.12 MA1314.2.2 / MA1314.2.3 MA1314.2.1 MA1314.2.10 MA1314.2.14 MA1314.2.16 MA1314.2.20 MA1314.2.4 MA1314.2.7 MA1314.2.8 MA1314.2.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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