Transcription Factor
| Accessions: | T061908_1.02 (CISBP 1.02) |
| Names: | T061908_1.02;, ZFA24 |
| Organisms: | PBM CONSTRUCTS |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 88 |
| Pfam Domains: | 4-19 Zinc-finger double domain 7-30 C2H2-type zinc finger 8-30 Zinc finger, C2H2 type 8-30 C2H2-type zinc finger 22-46 Zinc-finger double domain 35-58 C2H2-type zinc finger 36-58 C2H2-type zinc finger 36-58 Zinc finger, C2H2 type 50-74 Zinc-finger double domain 63-86 C2H2-type zinc finger 64-86 C2H2-type zinc finger 64-86 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 SRPGEKPYKCPECGKSFSRSDNLVRHQRTHTGEKPYKCPECGKSFSQSSNLVRHQRTHTG 60 61 EKPYKCPECGKSFSQRAHLERHQRTHTG |
| Interface Residues: | 8, 18, 19, 20, 21, 22, 24, 25, 33, 46, 47, 48, 49, 50, 52, 53, 54, 74, 75, 76, 77, 78, 79, 80, 81, 82, 85 |
| 3D-footprint Homologues: | 2kmk_A, 7n5w_A, 1tf3_A, 7w1m_H, 6jnm_A, 6ml4_A, 5v3j_F, 1mey_C, 6blw_A, 5kkq_D, 1f2i_J, 6u9q_A, 5ei9_F, 2jpa_A, 5kl3_A, 2drp_D, 7ysf_A, 1g2f_F, 6wmi_A, 5k5i_A, 8ssq_A, 5und_A, 2gli_A, 1llm_D, 7eyi_G, 5k5l_F, 8ssu_A, 1ubd_C, 4x9j_A, 8h9h_G, 6e94_A, 1tf6_A, 2lt7_A, 2i13_A, 6a57_A, 1yuj_A, 3uk3_C, 8cuc_F, 7y3l_A, 2wbs_A, 5yel_A, 7txc_E, 8gn3_A, 4m9v_C, 7y3m_I, 5yj3_D |
| Binding Motifs: | M0558_1.02 GGAGAAGa |
| Related annotations: | PaperBLAST |
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