Transcription Factor
| Accessions: | O80542 (JASPAR 2024), T01956 (AthalianaCistrome v4_May2016) |
| Names: | ERF19_ARATH, At1g22810, T01956; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 144 |
| Pfam Domains: | 12-62 AP2 domain |
| Sequence: (in bold interface residues) | 1 MDYRESTGESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCL 60 61 HQPDSLESLNFPHLLNPSLVSRTSPRSIQQAASNAGMAIDAGIVHSTSVNSGCGDTTTYY 120 121 ENGADQVEPLNISVYDYLGGHDHV |
| Interface Residues: | 18, 20, 22, 23, 24, 28, 30, 37, 39 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 5i44_I |
| Binding Motifs: | M0062 / MA1255.1 GgyggyGgCGGTGGh M0056 cdyCACCGACAmhrm MA1424.1 cdyCACCGACAmhrm MA1424.2 yCACCGACA |
| Binding Sites: | MA1255.1.6 MA1255.1.8 MA1255.1.4 MA1255.1.15 MA1255.1.1 MA1255.1.10 MA1255.1.11 MA1255.1.12 / MA1255.1.7 MA1255.1.13 MA1255.1.14 MA1255.1.16 MA1255.1.17 MA1255.1.18 MA1255.1.19 MA1255.1.2 MA1255.1.20 MA1255.1.3 MA1255.1.5 MA1255.1.9 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Similarity regression predicts evolution of transcription factor sequence specificity. Nat Genet 51:981-989 (2019). [Pubmed] |
| Related annotations: | PaperBLAST |
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