Transcription Factor
| Accessions: | UP00577A (UniPROBE 20160601) |
| Names: | ANAC040, Arabidopsis NAC domain containing protein 40, F12K2_12, F12K2.12, NTL8, protein NTM1-like 8 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | protein NTM1-like 8: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. |
| Length: | 157 |
| Pfam Domains: | 14-140 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSKEAEMSIAVSALFPGFRFSPTDVELISYYLRRKIDGDENSVAVIAEVEIYKFEPWDLP 60 61 EESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVF 120 121 HIGRAPRGERTEWIMHEYCIHGAPQDALVVCRLRKNA |
| Interface Residues: | 41, 43, 45, 47, 49, 51, 52, 56, 62, 64, 81, 86, 88, 97, 99, 101, 121, 125, 126, 127, 130 |
| 3D-footprint Homologues: | 1mow_A, 7xp3_B, 3swp_A |
| Binding Motifs: | UP00577A_1 srTTAAGkAAyc UP00577A_2 rygarGGAAAcyy |
| Binding Sites: | AATACTTA ATAAGGAA ATACTTAA ATTACTTA ATTCCTTA CGAAGGAA CGAAGTAA CTAAGCAA CTAAGGAA CTAAGTAA GCAAGGAA GTAAGGAA GTAAGTAA GTTACTTA GTTCCTTA TAAGGAAA TAAGTAAA TTAAGCAA TTAAGGAA TTAAGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.