Transcription Factor

						

			
Accessions: UP00027A (UniPROBE 20160601)

			
Names: odd-skipped related 1 (Drosophila), Odd1, Osr1, Protein odd-skipped-related 1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Uniprot: Q9WVG7
Description: odd-skipped related 1 (Drosophila): Mus musculus HCM5520 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence
Length: 107
Pfam Domains:     16-33 C2H2-type zinc finger
    16-38 Zinc finger, C2H2 type
    16-38 C2H2-type zinc finger
    30-54 Zinc-finger double domain
    43-64 C2H2-type zinc finger
    44-66 C2H2-type zinc finger
    44-66 Zinc finger, C2H2 type
    58-81 Zinc-finger double domain
    72-92 C2H2-type zinc finger
    72-96 C2H2-type zinc finger
    72-94 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 KKPTRGRLPSKTKKEFVCKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR   60
  61 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHSQVKELKTSKIKC
Interface Residues: 16, 26, 27, 28, 29, 30, 32, 33, 34, 40, 41, 54, 55, 56, 57, 58, 59, 60, 61, 62, 65, 82, 83, 84, 85, 86, 87, 89, 90, 93, 94
3D-footprint Homologues: 2kmk_A, 7y3l_A, 6ml4_A, 7n5w_A, 1tf3_A, 6jnm_A, 3uk3_C, 8cuc_F, 1tf6_A, 2gli_A, 1llm_D, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 4x9j_A, 2i13_A, 1mey_C, 5kl3_A, 6wmi_A, 1g2f_F, 5ei9_F, 2jpa_A, 7w1m_H, 5und_A, 2drp_D, 5k5i_A, 4m9v_C, 8h9h_G, 7eyi_G, 8gh6_A, 2lt7_A, 7y3m_I, 6e94_A, 7ysf_A, 6a57_A, 1yuj_A, 8ssq_A, 5v3j_F, 1f2i_J, 5yel_A, 8gn3_A, 7txc_E, 2wbs_A, 5yj3_D, 1le8_A
Binding Motifs: UP00027A_1 htwwACrGTAGCwmwr
UP00027A_2 ryayGCTACywrmwhm
Binding Sites: AACAGTAG
AACGGTAG
ACAGAAGC
ACAGTAGT
ACGGTAGC
AGCTACCG
AGCTACTG
CACAGTAG
CAGTAGCA
CAGTAGCC
CAGTAGCG
CCAGTAGC
CCGGTAGC
CGCTACCG
CGGTAGCA
CGGTAGCC
CTACTGTA
GCAGTAGC
GCTACCGA
GCTACTGA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.