Transcription Factor
| Accessions: | T089191_1.02 (CISBP 1.02) |
| Names: | CIMG_06089T0, T089191_1.02; |
| Organisms: | Coccidioides immitis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 646 |
| Pfam Domains: | 95-148 Homeobox domain 107-146 Homeobox KN domain 297-320 C2H2-type zinc finger 412-433 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSNESQQHIPKRTGLDVLSGAEFTEIQESMGNMNPSDSMSFDLNSIFPYSEASSTHSTEA 60 61 ILYDTDQSVHQHVFSNPTIGYEQPQEPESIGKLSNWSKDAVEVLKKWLKQNCRHPYPTKQ 120 121 EKAELAEQTELTVTQVSTWFANARRRGRHASADRCLTSTSLSCPDKPRKVSDEQWPSFSP 180 181 LDRWRNSPPEVEAASLEAIRSAVARSGTSYLPTGDLQHQSPPEDNDARSLVSSKASGSAV 240 241 SSSSRSSAYSFDSNHSHGSFGRFYLEKVPRRRHRRQTRPASTLPTPSTKRSVGKRPYQCT 300 301 FCTDTFRTKHDWTRHENTLHLSLETFTCAPFGSTYNDPSGGTRMCTFCDCPQPSESHIES 360 361 HRFSLCQQKPVALRTFYRKDHLVQHLRLVHGVNNLIPSMDTWKSQVTNINSRCGFCGETF 420 421 TLWSERNDHIARHFRKGALMKDWRGCRGLDPSVALAVGNAMPPYLIGIECTGIEPFSASW 480 481 LAAKDARGAEPTDQRTSTASKPTPFEYLTARLTGFVNGIQAAGGTVSDELLQKEARCIMY 540 541 GDDDPWNQTAADNPEWLKLFKEGMGLCAASGPPQSLGSEDYSFCLPWSAGQWEPFNATTN 600 601 PISQDSSEPMLNEWMSWAWHSPECLVEYRQSNMAAGSSRPTGKKGS |
| Interface Residues: | 93, 134, 135, 137, 138, 141, 142, 143, 145, 146, 147, 148, 149, 287, 307, 308, 309, 310, 311, 312, 314, 315, 336, 337, 338, 339, 340, 341, 342, 343, 356, 357, 378, 379, 380, 381, 384, 422, 424, 425, 428 |
| 3D-footprint Homologues: | 1puf_B, 8ejp_B, 2ld5_A, 5jlw_D, 7xrc_C, 1le8_A, 1ig7_A, 1au7_A, 8osb_E, 7q3o_C, 1b72_A, 2r5y_A, 8pmf_A, 1k61_B, 3lnq_A, 1mnm_C, 1fjl_B, 3a01_E, 1zq3_P, 6es3_K, 5flv_I, 3rkq_B, 8g87_X, 1nk2_P, 7psx_B, 5zjt_E, 4xrm_B, 3cmy_A, 2d5v_B, 1le8_B, 6fqp_B, 4cyc_A, 2lkx_A, 1puf_A, 1jgg_B, 6a8r_A, 4xrs_G, 3d1n_M, 8bx1_A, 6fqq_E, 6e94_A, 7w1m_H, 6ml4_A, 5ei9_F, 5yel_A, 8ssq_A, 7ysf_A, 4m9v_C, 2gli_A, 5v3j_F, 4x9j_A, 2drp_D, 1llm_D |
| Binding Motifs: | M0822_1.02 yrwyatrwyr |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.