Transcription Factor
| Accessions: | T102407_1.02 (CISBP 1.02) |
| Names: | GRMZM2G087741, T102407_1.02; |
| Organisms: | Zea mays |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 295 |
| Pfam Domains: | 39-82 KNOX1 domain 88-136 KNOX2 domain 182-203 ELK domain 222-261 Homeobox KN domain 229-262 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MEDLYSIHPGISRVVGGAASEASVAGAGAGGPSPSDLTELMKAQIASHPRYPSLLSAYIE 60 61 CRKVGAHPHVTSLLEEVSRERRPDAGAGEIGVDPELDEFMDAYCRVLVRYKEELTRPFDE 120 121 AASFLSSIQAQLSDLCSGGSSPAATATHSDDMMGSSEDEQCSGDTDVPDMGQEHSSHLGD 180 181 HELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARTVLLEWWNTHYRWPYPTEEDKVRL 240 241 AAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGVAGGSSGTTLYFDTGTIGP |
| Interface Residues: | 205, 207, 208, 209, 210, 249, 250, 252, 253, 256, 257, 260, 261, 264 |
| 3D-footprint Homologues: | 6fqp_B, 1mnm_C, 1nk2_P, 1puf_B, 1k61_B, 2ld5_A, 5jlw_D, 1le8_A, 7q3o_C, 1au7_A, 7psx_B, 5hod_A, 1puf_A, 1b72_A, 6es3_K, 4qtr_D, 2h1k_B, 2lkx_A, 1du0_A, 4xrm_B, 2hdd_A, 8g87_X, 5zfz_A, 2r5y_A, 1zq3_P, 1fjl_B, 6fqq_E, 4xrs_G, 6a8r_A, 3lnq_A, 2d5v_B, 2hos_A |
| Binding Motifs: | M1210_1.02 msTGACrkCw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.