Transcription Factor

						

			
Accessions: T060968_1.02 (CISBP 1.02)

			
Names: NCU06487, T060968_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 484
Pfam Domains:   426-451 Zinc finger, C2H2 type
  426-452 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MSTTAASTLAYDPAGDRYDPDESKPSQGDAVLLHMLDGGRRPEIAIQAGLEALPSEHSDS   60
  61 DRDDSLEPDTASSMDGNEIIQSPHFNGEDHDDIEHLHLSLRRRNMSAEPSREINTGGGFD  120
 121 SLQSLAAGALGVVQNLSAPSVKQEEADAGPTPPITEHDTATVQSTIAARRAEADKDTDRA  180
 181 TQPAMLTPYSPRGITFSPREPGSIPSIASPTNPLTPNSLSEGLPPIHPTSPVFEGASQQT  240
 241 LPSIRDSLGVADLNQLSRPIIERSPLQPYPGSPPGFPTSLLSYTNHASPPQSASDPYRRE  300
 301 PVSPYFFSQGNGLQRPHDYASGPEPSAPDHSRSHMNASATSPGSIADRMSIDGLTSHTGT  360
 361 YVCKFQGCNAAPFQTQYLLNSHANVHSSARPHYCPVPGCSRGEGGRGFKRKNEMIRHGLV  420
 421 HDSPGYVCPFCPDREHKYPRPDNLQRHVRVHHTDKDKDDPLLREVLAQRPDGPSRGRRRR  480
 481 GGPS
Interface Residues: 345, 347, 348, 351, 361, 373, 374, 375, 376, 377, 378, 380, 381, 383, 384, 387, 405, 408, 409, 410, 411, 412, 413, 415, 416, 439, 440, 441, 442, 443, 445, 446
3D-footprint Homologues: 5v3j_F, 2kmk_A, 6jnm_A, 5ei9_F, 6ml4_A, 5kkq_D, 6blw_A, 3uk3_C, 7w1m_H, 2gli_A, 1ubd_C, 6a57_A, 6e94_A, 2jpa_A, 7ysf_A, 8gn3_A, 2wbs_A, 1f2i_J, 1tf6_A, 5kl3_A, 4x9j_A, 2drp_D
Binding Motifs: M0481_1.02 rtGmGGCTca
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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