Transcription Factor
| Accessions: | T001929_1.02 (CISBP 1.02) |
| Names: | PF13_0235, T001929_1.02; |
| Organisms: | Plasmodium falciparum |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:AP2 |
| Length: | 3858 |
| Pfam Domains: | 2362-2413 AP2 domain 3066-3119 AP2 domain 3789-3839 AP2 domain |
| Sequence: (in bold interface residues) | 1 MQNKSEFNSTNSKEFYQDEYDNVPCHRNEYINNQHKNVDYTNNNYVHEMSLINNTENLQN 60 61 SNNSNLISVKNELTQIYNNFPFTYEDVDITCKEKKNDQIKMYEKENVNIYNEQNEQNEQN 120 121 DQNDQNEQNEQYEQNEQNEQNEQYEQNEQSEQNNPFFLGSYKKENDIIPCDNNIIPCNNE 180 181 SYNLHINKRSTNEPLPKDEYLYNDKNYEISNKNNNNNNNNNNNNNNNNNYSNNNYSNNNF 240 241 SNNLYVNKHDMVNYYMKDNNEKLLNPSNFNNIYHHNEYPDNNNNCNVNSFLKNNVGENNK 300 301 YNNYIVHDNMFDNINNVNCVNNNIHSESYNKPTIYKNVMNYHNKNNYDMVTYSNNNCNIS 360 361 NNNYEDIISPYNTYNDANCKFQNFNNYNMPMHDNYSIKKLYHNNNFYYNNNINNNHYQNN 420 421 YHHNNIYNNIDTAQNINIPFLNNYNENINTGLYNNMINNNMNTQYNATPMLNQMFLNYNN 480 481 DEHVKNIHNENNLSSYKNIPIVQNNTFINNEESHFIEDKKLYYNNMIDSNNMDILNYKHP 540 541 IYNNMNNSVQRKEKNVKTIPSYMNNLSDQHISDKDNIVWKQTYNNINIVGDKKENIDEIY 600 601 DMNINISALNKEKSNINLEKYKTDCYNSNMMGPINMDNKMNGENIMSGDNKMNGGNIMSG 660 661 DNKMNGGNIMSGDNKMNGGNIMSGDNKMNGENIMSGDNKMNGENIMSGENIMSGENIMNG 720 721 ENIMNGDNKMNGENIMSDDNNYNSPWDVNFPNSLYNNNCISNKSKYTNRSNSYELSLFKD 780 781 NKKNNINSNSNSNNNNNNNSNNNKYDDMLNKKMLYSIYLQSLLNNLNNEIYNDNEHDDDI 840 841 STSVFYKDYLKRNNINNQLILYNKKRNISNRFFNNIPNINNYFSYLNYYIESLRLLYNKL 900 901 LRNRNLILILAKEIFSKNKKLDKTKKNIYTSNNEKYSYIRQLLSVLLPQPPIYPPFEIWF 960 961 FMSKKCASQLHKLHLTIYMVYQKIIYNFSNILLQINNDMNITKPNKIQKDINESNDYLNL 1020 1021 YDHNENEKKNIKYDDKHEESYNQRLYNLKKTNLDTNQNDSNSQIQLDKPIISNTLPTTDE 1080 1081 KMIISLNSHNNDDRIINNMDTNMLIQINKKLEYIITSINNINKIIMNKKNVQNILQGHHN 1140 1141 INEKMYNMHPINPIQTSNLRTFESISDNIISCDDENNINIIEDEENFKNTKENKNETTNE 1200 1201 KTNETTNEKTNETTNETTNEKTNENTNETTNETTNENTNDIDYINIDKELSNNISTNKQI 1260 1261 HINNNQIIAYNNLEYNSLFNKWNNIKSDIHNYIYEENPFNILDNIKYELKDVYNQMMNLK 1320 1321 KTDNILTINDKLLHNLLKLDNSTHQMDIPNISYDNKWKGSSNNHNNDLNNNNNNYYHNYY 1380 1381 LNNNNFNENKNVLEELLSNNNCFNRINNQFKNKDNFKEPNLMTHNDIADDISICSNEDVN 1440 1441 DIIYNINRTDDILKRLMYLSNNYYNNMIEYDNYILHSYQHNDHILNELNNNTVTYYNNIK 1500 1501 KKKNFNNQLLPRTKRNEDFIFNNNHIVTPNNIYNNNNNNNKLADSEIMENVMQTCNQNNY 1560 1561 QFNRTESNDNLKNIPQENNFLLPNSNMEKFGELINVDMNNIENNINMFNNMYNNVNNNIN 1620 1621 GNNINGNNINGNNIIGNNINGNNINGNNINGNNINNNNINSNNINSNNINSNNINSNNIN 1680 1681 SNNINSNNINSNNINSNNINSNNINSNNINSNIYNNMYNMNYKNNVISSNNNYINNINNE 1740 1741 QHSNPMNYNTYGYDLSNNVNHLFYNNNIMDGRYNISNNNIIQNENIKGIYPHIYKSNHMV 1800 1801 NVETNNFDIYDNVPNKYTSMDNKDFVGEYISDREERYYDINILNDENNINKNIINNNIND 1860 1861 MNVYDNNSIHSNNNNNFDYIKNIDNNNNNINDRVFDSRNSYECSFPLLTNGPYYYENENN 1920 1921 TSSNILCNQDVNLTNNNFINYESNISNNYNQLISDNNNEGNINMNKNFNVFNNNVLINNC 1980 1981 TINDNNVDNNKMIDSNMIDGNMIDSNMIDSNMNGNNMNENNMNENNIIENNMNGNNIIEN 2040 2041 NMNGNNIIENNMNGNNIIENNMNGNNIIDNNMIDNNLIDNNMIDNNLIDNNLIDNNMIDN 2100 2101 NMMDNNMYDHINNFTINSPMIDMNSFEEDPKNYNMIHINETDIINLTNEDLINNSENYYK 2160 2161 HDNTSSYLLNYQNCKNFELKNVSNVEIEQTNIMDSNNTYNKITEENETNSSHILLEEKIN 2220 2221 KTNDMCKNDTEINDHSLAILLKKNPSEKKKIMNNHHNNNKKNNKKKKKDDLHEHNNKEKL 2280 2281 QNCHNEYLDSNDYNSDNNTNKDNVFVINNIKNTNCNINQNNDIISKNVDNSSKNNDISNE 2340 2341 KDNINKMKLKKMLEITNKLIGKKYRGICYDPTRNGWSTFVYKDGVRYKKFFSSFKYGNLL 2400 2401 AKKKCIEWRLKNLNPSSHAYSFSLKAKEEFNEVLNDNYKDVGILYDNKKDSNNNNNIKNN 2460 2461 GNQDDDGNRDILYVNAFLNIYNDENVKEKCFTDDNDNVKDNEKNTKEIKIIKNKIPPPKK 2520 2521 KTVQNIRTNEKCNEEKEIYCGDNTNFNVTNNHNNNNNSNGNNSNGNNSNGNNSNMLDERQ 2580 2581 HSYYNDTINEKKKKIINKNTINILHDDIEQTYSKNNNLCDNNLSNLLNEKKNNALNTGKR 2640 2641 KNDRENYTNNHMNTDSFLRNNSGDNLMDKNKNCKLFSNTLENDETYSCDTQNVPDDVLKN 2700 2701 NEYKRKKMCTVSEAKIIKDTNDFVDMMYTLVERNNTFDNNSDLKKDQMDNKKEQEDVEKD 2760 2761 VKENEKNDIKEYDEHKDVHVDVEEGLKKTTRNHLININNCDTYNHENNNNQNYLIHNSTN 2820 2821 NTKTKNKSCIDNIDLTLNNINCEIPLIEDNYLYDKDKIMNDINTYENIEDINGKHHNSCN 2880 2881 FMNVDYKKDKHVTSYNDNLKNNEEDIFFNNSNKNNFVLHNNNSNKIKNDENYFAYKDKLL 2940 2941 KYMNTCKYTNDEEKHIFLQFLKIKTEWVLVELNNLEEKYHHYFRNKIESFYKNYLLKVKN 3000 3001 NKKQNENIKELEIIFENKLNTPWMCMIFPYYFISYFNYKIFCILKCTKKKRVRKNTNLIK 3060 3061 DKILTSKLKGVNFIKYKKAWCFTYVDVDDKKKKKIFPVNDYGFVESKALSILFRKSFFFH 3120 3121 LNKIHNFLKNILYNKNNISNTMINQGNTYNNINEYIDHYKKYEEFLVCYGKIIYFNEMKN 3180 3181 IYICSENKQNALNYMPKEIKRQICNKMCSHKEYNMDNSMDNSMDNNIDNNIDNNIDNNID 3240 3241 NNIDNNIDNNIDNNLCKNLCNKIDPINLLITTRYYFFKKSKIMNFPKGLVYLSGYFLWLV 3300 3301 AFLNNEKQEIIISFSVRKYSYDIAKAKCLECYYCLLHKYKFKPLNISGVIDIVLESDIEC 3360 3361 KNYNLLDYSSEDIMSLEYLFLYFSPSSYVLHNNTLYKKISRKNQELHKQYDKLFPGQYVH 3420 3421 LNTYQTYEITNNDLIDNNIKCANAEMVSNIYNDKLYQDDKNKFISPRNEQNILGTMIYNN 3480 3481 QEEYHDVNMDQINKNKEEPITNITKNISNDLSPLIYDHQNITYKKNDKKSIPLCFSDDEE 3540 3541 AKEINDKIKKKKDINLNCMSNLHNEISKKSANINITNHNINVQMNDSMNGHLVDEKIHMD 3600 3601 NKNNTNKIDNNINNIHNINNIHNNNNSCSSCCFYVKHVNRESDNGNSENLFTSKTFQDTY 3660 3661 KQTYINNDYYKNILNKNICFFFDNNIQDIYLKKYYDELFNEKSNEDENIKNEHILFKRID 3720 3721 KKEENIGIFILLNCQWLSDSFVNNVNQIETKYADIYSFKNYLNTCEEVYNWKHKKNFIKD 3780 3781 CAEISKKFPRIVGVHYDSYATAWVVNCSFNKKRHDKKFSVKTFGFLQARKLAIEYRERWI 3840 3841 QLKAFHRLNNLKKKTEKL |
| Interface Residues: | 1068, 1069, 1070, 1072, 1094, 2441 |
| 3D-footprint Homologues: | 4aik_A, 3cmu_A, 8amd_A |
| Binding Motifs: | M0056_1.02 rGCCCCry |
| Related annotations: | PaperBLAST |
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