Transcription Factor

						

			
Accessions: PRDM1_MOUSE (HOCOMOCO 10)

			
Names: B lymphocyte-induced maturation protein 1, Beta-interferon gene positive regulatory domain I-binding factor, Blimp-1, EC 2.1.1.-, PR domain zinc finger protein 1, PR domain-containing protein 1, PRDM1_MOUSE
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Length: 856
Pfam Domains:   132-232 SET domain
  606-628 Zinc finger, C2H2 type
  606-628 C2H2-type zinc finger
  620-644 Zinc-finger double domain
  634-656 Zinc finger, C2H2 type
  634-656 C2H2-type zinc finger
  648-673 Zinc-finger double domain
  662-684 Zinc finger, C2H2 type
  662-684 C2H2-type zinc finger
  676-700 Zinc-finger double domain
  690-712 C2H2-type zinc finger
  704-727 Zinc-finger double domain
Sequence: 
(in bold interface residues)		   1 MREAYLRCWIFSWKNVWVRPCQRLHFKTVLLQGSLLYTALDSYSTVQAAPKSSSGSVKFQ   60
  61 GLAETGIMKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGADGGTSVQAEASLPRNLLF  120
 121 KYAANNSKEVIGVVSKEYIPKGTRFGPLIGEVYTNDTVPKNANRKYFWRIYSREEFHHFI  180
 181 DGFNEEKSNWMRYVNPAHSAREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERL  240
 241 HYPYPGELTVINLTQTESNPKQYSSEKNELYPKSVPKREYSVKEILKLDSNPSKRKDIYR  300
 301 SNISPFTLEKDMDGFRKNGSPDMPFYPRVVYPIRAPLPEDFLKASLAYGMERPTYITHSP  360
 361 LPSSTTPSPPASSSPEQSLKSSSPHSSPGNTVSPLAPGLPEHRDSYSYLNVSYGSEGLGS  420
 421 YPGYAPAPHLPPAFIPSYNAHYPKFLLPPYGISSNGLSTMNNINGINNFSLFPRLYPVYS  480
 481 NLLSGSSLPHPMLNPASLPSSLPTDGARRLLPPEHPKEVLIPAPHSAFSLTGAAASMKDE  540
 541 SSPPSGSPTAGTAATSEHVVQPKATSSVMAAPSTDGAMNLIKNKRNMTGYKTLPYPLKKQ  600
 601 NGKIKYECNVCAKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEK  660
 661 PHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKC  720
 721 AQCHKSYIHLCSLKVHLKGNCPAGPAAGLPLEDLTRINEEIERFDISDNADRLEDMEDSV  780
 781 DVTSMVEKEILAVVRKEKEETSLKVSLQRNMGNGLLSSGCSLYESSDLSLMKLPHSNPLP  840
 841 LVPVKVKQETVEPMDP
Interface Residues: 571, 573, 579, 582, 595, 606, 616, 617, 618, 619, 620, 622, 623, 624, 627, 636, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 657, 672, 673, 674, 675, 676, 678, 679, 682, 701, 702, 703, 704, 706, 707, 729, 730, 731, 732, 733, 734, 735
3D-footprint Homologues: 5v3j_F, 6wmi_A, 7w1m_H, 2kmk_A, 1tf3_A, 6jnm_A, 8cuc_F, 5k5i_A, 8ssq_A, 5k5l_F, 8ssu_A, 1tf6_A, 8gn3_A, 5kkq_D, 6u9q_A, 5ei9_F, 4m9v_C, 6e94_A, 7ysf_A, 2lt7_A, 2i13_A, 7y3m_I, 6a57_A, 5yel_A, 1ubd_C, 2gli_A, 7n5w_A, 1mey_C, 7txc_E, 5kl3_A, 2drp_D, 5und_A, 1g2f_F, 6ml4_A, 4x9j_A, 6blw_A, 2wbs_A, 7eyi_G, 8h9h_G, 2jpa_A, 3uk3_C, 7y3l_A, 1f2i_J, 1llm_D, 5yj3_D
Binding Motifs: PRDM1_MOUSE.H10MO.A|M01306 rAAAGkGAAAGTrm
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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