Transcription Factor
| Accessions: | T12036 (AthalianaCistrome v4_May2016), Q949N0 (JASPAR 2024) |
| Names: | ANAC053, AT3G10500, T12036;, NAC domain-containing protein 53, NAC53_ARATH, Protein ANTHER INDEHISCENCE FACTOR, Protein NTM1-like 4 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 549 |
| Pfam Domains: | 9-136 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGRGSVTSLAPGFRFHPTDEELVRYYLKRKICNKPFKFDAISVTDVYKSEPWDLPDKSRL 60 61 KSRDLEWYFFSMLDKKYRNGSKTNRATEMGYWKTTGKDREILNGSKVVGMKKTLVYHKGR 120 121 APRGERTNWVMHEYRLVDQDLDKTGVHQDAFVLCRIFQKSGSGPKNGEQYGAPFVEEEWE 180 181 EEDDMTFVPDQEDLGSEDHVYVHMDDIDQKSENFVVYDAIPIPLNFIHGESSNNVETNYS 240 241 DSINYIQQTGNYMDSGGYFEQPAESYEKDQKPIIRDRDGSLQNEGIGCGVQDKHSETLQS 300 301 SDNIFGTDTSCYNDFPVESNYLIGEAFLDPNSNLLENDGLYLETNDLSSTQQDGFDFEDY 360 361 LTFFDETFDPSQLMGNEDVFFDQEELFQEVETKELEKEETSRSKHVVEEKEKDEASCSKQ 420 421 VDADATEFEPDYKYPLLKKASHMLGAIPAPLANASEFPTKDAAIRLHAAQSSGSVHVTAG 480 481 MITISDSNMGWSYGKNENLDLILSLGLVQGNTAPEKSGNSSAWAMLIFMCFWVLLLSVSF 540 541 KVSILVSSR |
| Interface Residues: | 77, 82, 84, 93, 95, 97, 117, 121, 122, 123, 126 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0662 CTTGttcymCAAGaAA M0674 TTtCTTGkrgarCAAGw MA2049.1 / UN0376.1 haCAAGAAAymw MA2049.2 CAAGAAA |
| Binding Sites: | MA2049.2.15 / MA2049.2.6 MA2049.1.4 / UN0376.1.5 MA2049.1.5 / UN0376.1.6 MA2049.1.6 / UN0376.1.7 MA2049.1.7 / UN0376.1.8 MA2049.1.8 / UN0376.1.9 MA2049.1.9 / UN0376.1.10 MA2049.1.10 / UN0376.1.11 MA2049.1.12 / UN0376.1.12 MA2049.1.13 / UN0376.1.13 UN0376.1.14 MA2049.1.1 / UN0376.1.1 UN0376.1.2 MA2049.1.2 / UN0376.1.3 MA2049.1.3 / UN0376.1.4 UN0376.1.16 UN0376.1.17 UN0376.1.18 MA2049.1.14 / UN0376.1.15 MA2049.1.15 / UN0376.1.19 UN0376.1.20 MA2049.1.16 MA2049.1.11 MA2049.1.17 MA2049.1.18 MA2049.1.19 MA2049.1.20 MA2049.2.18 / MA2049.2.4 / MA2049.2.8 / MA2049.2.9 MA2049.2.13 MA2049.2.10 / MA2049.2.12 / MA2049.2.14 / MA2049.2.16 / MA2049.2.17 / MA2049.2.19 / MA2049.2.2 / MA2049.2.20 / MA2049.2.3 / MA2049.2.5 / MA2049.2.7 MA2049.2.1 MA2049.2.11 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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