Transcription Factor

						

			
Accessions: T161798_1.02 (CISBP 1.02)

			
Names: NCU07705, T161798_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Zinc cluster
Length: 710
Pfam Domains:   134-166 Fungal Zn(2)-Cys(6) binuclear cluster domain
  313-549 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MSPSSNSDSPASVVGSMTMAAQAAPNVVRQYPLPNRDFTIEIPSPQVAPTTNGVNTVKSP   60
  61 STLKSSRAPNFSREGILGSAQKARNLSQSSENRPDHVNVSNGFHKAPSEESTNPLKRRNT  120
 121 DAGVDYPRRRATIACEVCRSRKSRCDGTKPKCKLCTELGAECIYREPGIKLDAGDKLILE  180
 181 RLNRIESLLQLNMGLTGHTHGLGLSHNSPGMSNGTGLSGDNLMMQNPDAAGFVSVIPSGG  240
 241 LGTWSATATNSLSTMPKVHTNAALHLLQWPMIRDLVSRPYDPQILLQLEMAREPLHSLTK  300
 301 TPCVDLSNTSAYIEAYFDRVNVWYACVNPYTWRSHYRIALSNGFREGPESCIVLLVLALG  360
 361 QASLRGSISRIVPHEDPPGLQYFTAAWALLPGMMTSNSVLAAQCHLLAAAYLFYLVRPLE  420
 421 AWNLLCTTSTKLQLLLMTPNRVPVDQRELSERIYWNALLFESDLLAELDLPHSGVVAFEE  480
 481 NVGLPCGFEGDEQEAVGRDDLWYFLAEIALRRLLNRVSQLIYSKDSLASTTSLEPIVTEL  540
 541 DFQLTQWYESLPLPLQFPFTRTMLPDPVQTVLRLRFFACRTIIYRPYILAVLDNEQAILD  600
 601 PSVRDACTKCLEASIRQLEHISAHHAGHMPYLWQGALSIVSQTLLIMGATMSPSLNSILV  660
 661 SLVSHRDVIDQIINDVVMEIERYSVLSPSLSLSAEIIKEAEVRRRTFLSG
Interface Residues: 128, 129, 130, 139, 141, 142, 143, 144, 157, 158, 169, 171, 172
3D-footprint Homologues: 1f5e_P, 6o19_A, 1pyi_A, 2er8_C, 1hwt_C, 1d66_B, 1zme_D, 7uik_T, 3coq_A
Binding Motifs: M1759_1.02 twtTCCGGawccg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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