Transcription Factor
| Accessions: | GhHOX4 (EEADannot 2025-01-07) |
| Names: | Gh_Sca007830G01 |
| Organisms: | Gossypium hirsutum |
| Libraries: | EEADannot 2025-01-07 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:HD-ZIP |
| Length: | 761 |
| Pfam Domains: | 70-123 Homeobox domain 276-495 START domain |
| Sequence: (in bold interface residues) | 1 MGVDNRTAFLHSKRMASHGELRLIGENYDPGFIGMMKEDDGYGSSDDFEGALGNDQDTAD 60 61 NGRPPKKKKKFHRHNPHQIHELESFFKECPHPDEKQRRELSRRLALESKQIKFWFQNRRT 120 121 QMKTQLERHENVXNVILKQENDKLRAENDLLRQAIASAICNNCGVPAVPDEISYEPSQLM 180 181 IENSRLKDELNRARALTNKFLGRHLSSSSANPSPSPSQGLNSNVEVVVRRTGFCGLNNGS 240 241 ISLPMGFEFGHGATMPLMNPSFAYEMPYDKSALVDVALAAMDELIKMAQMGNPLWIKGFG 300 301 DGMETLNLEEYKRTFSSFIGMKPSGFTTEATRETAMVPLRGLALVDTLMDANRWAEMFPC 360 361 MISRAVTIDVLSSGKGVTRDNALQLMEAEFQVLSPLVPIRQIQFIRFCKQHSDSVWAIVD 420 421 VSINLSNAANALMFANCRRLPSGCVIQDMDNKYSKVTWVEHSEYDESTVHHLFRPLLSSG 480 481 FGFGAQRWIATLRRQYSSLAQLMSPDIHGEDINTVGKKSMLKLAQRMAYNFSAGIGASSV 540 541 NKWDKLNVGNVGEDVRVMTRKNVNDPGEPLGIVLSAATSVWMPITQQTLFGFLRNERMRN 600 601 QWDILSSGRPMQAMFSVAKGPGQGNCVSILRGAAVNGSDTNMLILQETWSDACGALIVYA 660 661 PVDASSIRVVMNGGDSSHVALLPSGFAILPGVQTDGPSMQPDIDENTSDGCILTVGFQIL 720 721 VNSVPTAKLTVESVETVNHLLTCTVEKIKAALSVTQLGSVE |
| Interface Residues: | 68, 70, 71, 100, 102, 103, 106, 109, 110, 112, 113, 116, 117, 119, 120, 121, 123, 124 |
| 3D-footprint Homologues: | 8ejp_B, 8pmf_A, 2lkx_A, 2ld5_A, 7psx_B, 1tf6_A, 8ik5_C, 8osb_E, 7q3o_C, 7xrc_C, 6es3_K, 8eml_B, 1zq3_P, 8g87_X, 6wig_A, 2hdd_A, 9b8u_A, 8bx1_A, 4cyc_A, 2hos_A, 6m3d_C |
| Binding Motifs: | EEAD0155 TGCATTTA |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.