Transcription Factor

						

			
Accessions: 4ldx_B (3D-footprint 20231221)

			
Names: ARFA_ARATH, Auxin response factor 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q8L7G0
Length: 337
Pfam Domains:   110-211 B3 DNA binding domain
  236-314 Auxin response factor
Sequence: 
(in bold interface residues)		   1 LSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKIL   60
  61 CKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTS  120
 121 THGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWS  180
 181 VFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAI  240
 241 TTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEPEKRFSGTIVGVQEN  300
 301 KSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPL
Interface Residues: 117, 122, 123, 124, 126, 167, 169, 170, 172
3D-footprint Homologues: 6ycq_A, 7et6_A, 6sdg_B
Binding Motifs: 4ldx_AB TTGTntCCCnnnGGGAnACA
Binding Sites: 4ldx_C
4ldx_D
			
Publications: Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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