Transcription Factor
| Accessions: | BdTHX1 (EEADannot 2023-12-22) |
| Names: | Bradi1g77610 |
| Organisms: | Brachypodium distachyon |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:Trihelix |
| Length: | 635 |
| Pfam Domains: | 76-162 Myb/SANT-like DNA-binding domain 419-515 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MQQEPTPEMPPFSPAVWRGPAGAPSPISSRPPAPGQQQQMVAAADELGGGGGAAASASGS 60 61 GSLDGEEGGSSAAGGNRWPREETLALLKIRSDMDAAFREAALKGPLWEQVSRRIGEMGYK 120 121 RSGKKCREKFENVDKYYRRTKDGRAGRAHGKTYRFFSELEALHSISISSSAAHPPPLPAL 180 181 APPPSKLPAPSPPLPTATCAMAAPGASLSSLGGSDGSETDDDEIAAEGSKKRKRHSSNWS 240 241 GITTTSSGGGGGKKKQATMRLFEGMMRQVMERQEAMQQRLLDAIERRDQERLAREESWRR 300 301 GETARLAREQDALARDRAAAAARDAAVVSFIHRVTGQMAVLPPPPPETKTATKAAMLKRP 360 361 PPAPPLQPTTPRNQPQQPHVVMPMSAPASASAPARAETSPAQSNEVVAVGGVDTAAAASR 420 421 WPKAEVHALIELRTEMEARYGNGGGGGHETPNKGPLWEDIAAGMRRLGYARSSKRCKEKW 480 481 ENINKYFKKVKESSRSKQRPVDSKTCPYFHQLDKLYRTKAQNAAAASQSPTAVTVLAAVP 540 541 LSSQTPAPHIVEHGPGKNLSNGNGNSNGMQAKASNGNGTAAANKLQVQSYDIRFQSQQQQ 600 601 QQHQNTNGGGNPPAAPASAAAASGAAPAPFLAMVQ |
| Interface Residues: | 124, 127, 128, 246, 353, 388, 389, 392, 396 |
| 3D-footprint Homologues: | 6kks_A, 5byg_D, 5j0n_F |
| Binding Motifs: | EEAD0015 ywTTTACyGc |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.