Transcription Factor
| Accessions: | T061567_1.02 (CISBP 1.02) |
| Names: | PZF1, T061567_1.02; |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | family:C2H2 ZF |
| Length: | 429 |
| Pfam Domains: | 50-74 C2H2-type zinc finger 66-90 Zinc-finger double domain 80-102 C2H2-type zinc finger 80-102 Zinc finger, C2H2 type 94-116 Zinc-finger double domain 108-130 C2H2-type zinc finger 108-130 Zinc finger, C2H2 type 134-159 C2H2-type zinc finger 164-185 Zinc finger, C2H2 type 164-186 C2H2-type zinc finger 178-205 Zinc-finger double domain 223-244 C2H2-type zinc finger 253-277 C2H2-type zinc finger 254-273 Zinc finger, C2H2 type 365-389 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MGGEVLNNEGMPLAELKQETIPISRSESSESLNSLTSTRSSSSNRPKTYFCDYDGCDKAF 60 61 TRPSILTEHQLSVHQGLRAFQCDKCAKSFVKKSHLERHLYTHSDTKPFQCSYCGKGVTTR 120 121 QQLKRHEVTHTKSFICPEEGCNLRFYKHPQLRAHILSVHLHKLTCPHCNKSFQRPYRLRN 180 181 HISKHHDPEVENPYQCTFAGCCKEFRIWSQLQSHIKNDHPKLKCPICSKPCVGENGLQMH 240 241 MIIHDDSLVTKNWKCHICPDMSFSRKHDLLTHYGSIHTEEDIPLELKYKISDIQQLVQDH 300 301 GVQLGNSKHSNEQDEEKISNRLRKRRKLTENNNVEFLQNEVDLEKRLESGENGLNLLLNT 360 361 VGRKYRCFYNNCSRTFKTKEKYEKHIDKHKVHELKLKILQEKEENKTLVDQNHKEPFIIQ 420 421 KETQSAGDK |
| Interface Residues: | 61, 62, 63, 64, 65, 67, 68, 70, 71, 72, 75, 90, 91, 92, 93, 94, 96, 97, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 146, 147, 148, 149, 150, 152, 153, 157, 173, 174, 175, 176, 177, 180, 183, 207, 210, 213, 231, 233, 234, 235, 236, 239, 240, 243, 264, 265, 266, 267, 268, 269 |
| 3D-footprint Homologues: | 7n5w_A, 2drp_D, 8ssu_A, 5kkq_D, 4x9j_A, 2gli_A, 1f2i_J, 5kl3_A, 1tf6_A, 5ei9_F, 1g2f_F, 6ml4_A, 8ssq_A, 7w1m_H, 6blw_A, 2kmk_A, 8h9h_G, 6e94_A, 7ysf_A, 2jpa_A, 1ubd_C, 7y3l_A, 1tf3_A, 6jnm_A, 3uk3_C, 8cuc_F, 6u9q_A, 8gn3_A, 5yj3_D, 2wbs_A, 5v3j_F, 1llm_D, 4m9v_C, 2lt7_A, 7y3m_I, 6a57_A, 7txc_E, 5k5i_A, 5yel_A |
| Binding Motifs: | M4424_1.02 TGTAGTGGGTGACC |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.