Transcription Factor

						

			
Accessions: T27076 (AthalianaCistrome v4_May2016)

			
Names: AT5G63260, T27076;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C3H
Length: 451
Pfam Domains:   104-127 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  169-190 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  212-236 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  399-422 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sequence: 
(in bold interface residues)		   1 MSKPEETSDPNPTGPDPSRSSSDEVTVTVADRAPSDLNHVSEELSDQLRNVGLDDSAKEL   60
  61 SVPISVPQGNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGS  120
 121 SCKFNHPVRRKLQDLKFLGSMRTRNGKEYIGRERVRERDEDVENPKLMECKYYFRTGGCK  180
 181 YGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTA  240
 241 IGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQAS  300
 301 DWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQHQMSVEEFPERPDQPECTYYL  360
 361 KTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFD  420
 421 HSIPPTFSPSSSQTVEARQVGANGNEDDSWH
Interface Residues: 130, 156, 399, 401
3D-footprint Homologues: 2han_B, 4umm_E, 1lo1_A, 7y7t_A
Binding Motifs: M0340 sAWAAAGKdra
M0343 sAAAAAGTdaa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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