Transcription Factor
| Accessions: | A0A1P8ATX4 (JASPAR 2024) |
| Names: | A0A1P8ATX4_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 630 |
| Pfam Domains: | 58-108 Myb/SANT-like DNA-binding domain 395-480 Myb/SANT-like DNA-binding domain 419-458 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSFWDVFDFENPKTLFTSKKKKKKSDRTVTIKIFQLITTTKNKIKLENLNYFHVFGNRKL 60 61 LELGYKRSSKKCKEKFENVQKYYKRTKETRGGRHDGKAYKFFSQLEALNTTPPSSSLDVT 120 121 PLSVANPILMPSSSSSPFPVFSQPQPQTQTQPPQTHNVSFTPTPPPLPLPSMGPIFTGVT 180 181 FSSHSSSTASGMGSDDDDDDMDVDQANIAGSSSRKRKRGNRGGGGKMMELFEGLVRQVMQ 240 241 KQAAMQRSFLEALEKREQERLDREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLI 300 301 QKITGHTIQLPPSLSSQPPPPYQPPPAVTKRVAEPPLSTAQSQSQQPIMAIPQQQILPPP 360 361 PPSHPHAHQPEQKQQQQPQQEMVMSSEQSSLPSSSRWPKAEILALINLRSGMEPRYQDNV 420 421 PKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKRPQDAKTCPYFHRLD 480 481 LLYRNKVLGSGGGSSTSGLPQDQKQSPVTAMKPPQEGLVNVQQTHGSASTEEEEPIEESP 540 541 QGTEKPEDLVMRELIQQQQQLQQQESMIGEYEKIEESHNYNNMEEEEDQEMDEEELDEDE 600 601 KSAAFEIAFQSPANRGGNGHTEPPFLTMVQ |
| Interface Residues: | 443, 446, 447 |
| 3D-footprint Homologues: | 3osg_A |
| Binding Motifs: | MA1661.1 wwGGTwAAAAww MA1661.2 GGTwAAAA |
| Binding Sites: | MA1661.2.12 MA1661.1.1 MA1661.1.10 MA1661.1.11 / MA1661.1.9 MA1661.1.10 / MA1661.1.12 MA1661.1.11 / MA1661.1.13 MA1661.1.12 / MA1661.1.14 MA1661.1.13 / MA1661.1.15 MA1661.1.14 / MA1661.1.16 MA1661.1.15 / MA1661.1.17 MA1661.1.16 / MA1661.1.18 MA1661.1.17 / MA1661.1.19 MA1661.1.1 / MA1661.1.2 MA1661.1.18 / MA1661.1.20 MA1661.1.3 MA1661.1.3 / MA1661.1.4 MA1661.1.4 / MA1661.1.5 MA1661.1.5 / MA1661.1.6 MA1661.1.6 / MA1661.1.7 MA1661.1.7 / MA1661.1.8 MA1661.1.8 / MA1661.1.9 MA1661.1.19 MA1661.1.2 MA1661.1.20 MA1661.2.1 / MA1661.2.11 / MA1661.2.13 / MA1661.2.16 / MA1661.2.17 / MA1661.2.20 / MA1661.2.3 / MA1661.2.4 MA1661.2.10 MA1661.2.14 / MA1661.2.19 MA1661.2.15 MA1661.2.18 MA1661.2.2 MA1661.2.5 MA1661.2.6 MA1661.2.7 MA1661.2.8 / MA1661.2.9 |
| Publications: | Yoo CY, Pence HE, Jin JB, Miura K, Gosney MJ, Hasegawa PM, Mickelbart MV. The Arabidopsis GTL1 transcription factor regulates water use efficiency and drought tolerance by modulating stomatal density via transrepression of SDD1. Plant Cell 22:4128-41 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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