Transcription Factor
| Accessions: | F4J2J6 (JASPAR 2024), T13573 (AthalianaCistrome v4_May2016) |
| Names: | RVE7L_ARATH, AT3G10113, T13573; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:MYB-related |
| Length: | 336 |
| Pfam Domains: | 65-109 Myb-like DNA-binding domain 68-122 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MVMMIIIYTEPEISLFPLQDRSEELSSNVENGSCNSNEGINPETSSHWIENVVKVRKPYT 60 61 VTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFFSKMAQEADSR 120 121 SEGSVKAIVIPPPRPKRKPAHPYPRKSPVPYTQSPPPNLSAMEKGTKSPTSVLSSFGSED 180 181 QNNYTTSKQPFKDDSDIGSTPISSITLFGKIVLVAEESHKPSSYNDDDLKQMTCQENHYS 240 241 GMLVDTNLSLGVWETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVN 300 301 ASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC |
| Interface Residues: | 65, 100, 103, 104, 107, 108 |
| 3D-footprint Homologues: | 6j5b_C, 7d3t_D, 3osg_A, 1mse_C |
| Binding Motifs: | M0580 / MA1191.1 wawawAAATATCtwa MA1191.2 wAAATATCt |
| Binding Sites: | MA1191.1.1 MA1191.1.10 MA1191.1.11 MA1191.1.12 MA1191.1.13 MA1191.1.14 MA1191.1.15 MA1191.1.16 MA1191.1.17 MA1191.1.18 MA1191.1.19 MA1191.1.2 MA1191.1.20 MA1191.1.3 MA1191.1.4 MA1191.1.5 MA1191.1.6 MA1191.1.7 MA1191.1.8 MA1191.1.9 MA1191.2.18 MA1191.2.1 MA1191.2.4 MA1191.2.14 MA1191.2.10 MA1191.2.11 MA1191.2.12 MA1191.2.13 MA1191.2.15 MA1191.2.16 MA1191.2.17 MA1191.2.19 MA1191.2.2 MA1191.2.20 MA1191.2.3 MA1191.2.5 MA1191.2.6 MA1191.2.7 MA1191.2.8 MA1191.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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