Transcription Factor
| Accessions: | T127950_1.02 (CISBP 1.02), Q84WP6 (JASPAR 2024), T10279 (AthalianaCistrome v4_May2016) |
| Names: | NST1, T127950_1.02;, ANAC043, NAC domain-containing protein 43, NAC43_ARATH, Protein EMBRYO DEFECTIVE 2301, Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 1, AT2G46770, T10279; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:NAC/NAM, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 365 |
| Pfam Domains: | 16-144 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MMSKSMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWD 60 61 IQEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRK 120 121 TLVFYKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKK 180 181 KNLHKTLNSPVGGASLSGGGDTPKTTSSQIFNEDTLDQFLELMGRSCKEELNLDPFMKLP 240 241 NLESPNSQAINNCHVSSPDTNHNIHVSNVVDTSFVTSWAALDRLVASQLNGPTSYSITAV 300 301 NESHVGHDHLALPSVRSPYPSLNRSASYHAGLTQEYTPEMELWNTTTSSLSSSPGPFCHV 360 361 SNGSG |
| Interface Residues: | 85, 90, 92, 101, 103, 105, 125, 129, 130, 131, 134 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M1402_1.02 aTwRCGTAAw MA1045.1 aTwRCGTAAw M0635 CkTraawwwsAMGcA M0643 TwrCkTraawwwcAMGc MA1045.2 TwRCGTAA |
| Binding Sites: | MA1045.2.16 MA1045.2.5 MA1045.1.1 MA1045.1.10 MA1045.1.11 MA1045.1.12 MA1045.1.13 MA1045.1.14 MA1045.1.15 MA1045.1.16 MA1045.1.17 MA1045.1.18 MA1045.1.19 MA1045.1.2 MA1045.1.20 MA1045.1.3 MA1045.1.4 MA1045.1.5 MA1045.1.6 MA1045.1.7 MA1045.1.8 MA1045.1.9 MA1045.2.1 MA1045.2.10 MA1045.2.11 MA1045.2.12 MA1045.2.13 MA1045.2.14 MA1045.2.15 MA1045.2.17 MA1045.2.18 MA1045.2.19 MA1045.2.2 MA1045.2.20 MA1045.2.3 MA1045.2.4 MA1045.2.6 MA1045.2.7 MA1045.2.8 MA1045.2.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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