Transcription Factor
| Accessions: | NGATHA1 (EEADannot 2025-01-07) |
| Names: | NGA1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | EEADannot 2025-01-07 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:B3 RAV |
| Length: | 310 |
| Pfam Domains: | 35-140 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MMTDLSLTRDEDEEEAKPLAEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERF 60 61 FPLDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 120 121 QRCVGDSGRDSRLFIDWRRRPKVPDHPHFAAGAMFPRFYSFPSTNYSLYNHQQQRHHHGG 180 181 GGYNYHQIPREFGYGYFVRSVDQRNNPAAAVADPLVIESVPVMMHGRANQELVGTAGKRL 240 241 RLFGVDMECGESGMTNSTEEESSSSGGSLPRGGGGGASSSSFFQLRLGSSSEDDHFTKKG 300 301 KSSLSFDLDQ |
| Interface Residues: | 42, 47, 48, 49, 51, 91, 93, 94, 96 |
| 3D-footprint Homologues: | 7et6_A, 6ycq_A, 8oj2_A |
| Binding Motifs: | EEAD0017 CACTTG |
| Binding Sites: | NGA1_1 |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.