Transcription Factor

						

			
Accessions: T037185_1.02 (CISBP 1.02)

			
Names: die-1, T037185_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 645
Pfam Domains:   315-384 C2H2 type zinc-finger (2 copies)
  426-506 C2H2 type zinc-finger (2 copies)
Sequence: 
(in bold interface residues)		   1 MANAVDMQQLLMSMDPSSANQFNMMNKGGACVMATSGGSASPTSSSGAPSSSSIMAETDE   60
  61 KDMFMPSQLIQNGLANNQLMSMILQQQSNQADSNIADAGHNNSGAEKNIIELLMSGNADL  120
 121 MKFATQFAQQAKSVDQEPEEQRESSPSPPPAVSLNSTLASMVFPTTSTATECSAASTTSS  180
 181 VDSAPSTVIVNGHSNSQSNTDDDDVTQQPSAKKQRTGDETPLTPTSNNQLMQSLLAQMGL  240
 241 SNPLHQQNQKQMKDESMMFSGLFPQGLAGIPLMFQSPLHQQFAGMQDFEPLSALSTPNKG  300
 301 SGVKRQYSSNNKNFCDICNKEVCNKYFLRTHMLKMHGIVIDENKTVIANIDTSIKEREGE  360
 361 LTFRCDTCRTMFKTRNQLRQHRQDVHGVLPLSTPRNNPNKSSVPTTPNGANNNSGPNSAS  420
 421 MSEEKCALCDKRVSPSMMMLHMAQDHFGAAAANGDLNQMMAILGQRNQSTEEKMSSNLLE  480
 481 CTDCSYKTRDPKNLDLHMERHIKMSEAKGRGDEDEDVALQLTTEAALQMVVQNQNQYDGD  540
 541 STAAALNLTFKNDGTKKEIEEEKATGNHERNSHTSGSISPSGSIPEGFGKNIGEKAFPTQ  600
 601 SFLIKCNDDSGEFLTEFLAQLPVRSVIDGPRQLVFNLHPAPPTTS
Interface Residues: 329, 331, 332, 335, 349, 352, 373, 374, 375, 376, 377, 379, 380, 490, 492, 493, 496
3D-footprint Homologues: 2jpa_A, 5kl3_A, 4x9j_A, 6e94_A, 1llm_D, 1g2f_F, 8gn3_A, 8h9h_G, 7n5w_A, 7ysf_A, 5k5i_A, 5kkq_D, 5yj3_D
Binding Motifs: M0382_1.02 awTTTAAAma
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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