Transcription Factor
| Accessions: | Q9S7G7 (JASPAR 2024) |
| Names: | MB3R1_ARATH, Myb-related protein 3R-1, Plant c-MYB-like protein 1, Protein PC-MYB1, Transcription factor MYB3R-1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 776 |
| Pfam Domains: | 35-81 Myb-like DNA-binding domain 38-96 Myb-like DNA-binding domain 87-133 Myb-like DNA-binding domain 90-147 Myb-like DNA-binding domain 139-181 Myb-like DNA-binding domain 142-187 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MKREMKAPTTPLESLQGDLKGKQGRTSGPARRSTKGQWTPEEDEVLCKAVERFQGKNWKK 60 61 IAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGR 120 121 IGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHW 180 181 NSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMHSNGDEGSSRPGVDAEESEC 240 241 SQASTVFSQSTNDLQDEVQRGNEEYYMPEFHSGTEQQISNAASHAEPYYPSFKDVKIVVP 300 301 EISCETECSKKFQNLNCSHELRTTTATEDQLPGVSNDAKQDRGLELLTHNMDNGGKNQAL 360 361 QQDFQSSVRLSDQPFLSNSDTDPEAQTLITDEECCRVLFPDNMKDSSTSSGEQGRNMVDP 420 421 QNGKGSLCSQAAETHAHETGKVPALPWHPSSSEGLAGHNCVPLLDSDLKDSLLPRNDSNA 480 481 PIQGCRLFGATELECKTDTNDGFIDTYGHVTSHGNDDNGGFPEQQGLSYIPKDSLKLVPL 540 541 NSFSSPSRVNKIYFPIDDKPAEKDKGALCYEPPRFPSADIPFFSCDLVPSNSDLRQEYSP 600 601 FGIRQLMISSMNCTTPLRLWDSPCHDRSPDVMLNDTAKSFSGAPSILKKRHRDLLSPVLD 660 661 RRKDKKLKRAATSSLANDFSRLDVMLDEGDDCMTSRPSESPEDKNICASPSIARDNRNCA 720 721 SARLYQEMIPIDEEPKETLESGGVTSMQNENGCNDGGASAKNVSPSLSLHIIWYQL |
| Interface Residues: | 35, 70, 71, 74, 75, 78, 79, 87, 121, 122, 123, 124, 126, 127, 130, 131, 132, 173, 174, 177, 178, 181, 182, 183 |
| 3D-footprint Homologues: | 7c4r_A, 1w0t_A, 5eyb_B, 7xur_A, 1vfc_A, 3osg_A, 2kdz_A, 3zqc_A, 6kks_A, 1mse_C |
| Binding Motifs: | MA1178.1 wwwwwTdACCGTTrr MA1178.2 wwcTAACGGTcaw MA1178.3 TAACGGTc MA2352.1 TrACCGTTr |
| Binding Sites: | MA1178.3.1 MA1178.3.13 / MA1178.3.15 / MA1178.3.17 / MA1178.3.19 / MA1178.3.9 MA1178.1.1 MA1178.1.10 MA1178.1.11 MA1178.1.12 MA1178.1.13 MA1178.1.14 MA1178.1.15 MA1178.1.16 MA1178.1.17 / MA1178.1.19 MA1178.1.18 MA1178.1.2 MA1178.1.20 MA1178.1.3 MA1178.1.4 MA1178.1.5 MA1178.1.6 MA1178.1.7 MA1178.1.8 MA1178.1.9 MA1178.2.3 MA1178.2.14 MA1178.2.1 MA1178.2.10 MA1178.2.11 MA1178.2.12 / MA1178.2.20 MA1178.2.13 MA1178.2.15 MA1178.2.16 MA1178.2.17 MA1178.2.18 MA1178.2.19 MA1178.2.2 MA1178.2.4 MA1178.2.5 MA1178.2.6 MA1178.2.7 MA1178.2.8 MA1178.2.9 MA1178.3.10 / MA1178.3.11 / MA1178.3.12 / MA1178.3.20 / MA1178.3.8 MA1178.3.14 / MA1178.3.3 MA1178.3.16 MA1178.3.18 / MA1178.3.7 MA1178.3.2 MA1178.3.4 MA1178.3.5 MA1178.3.6 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] Ito M, Araki S, Matsunaga S, Itoh T, Nishihama R, Machida Y, Doonan JH, Watanabe A. G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factors. Plant Cell 13:1891-905 (2001). [Pubmed] |
| Related annotations: | PaperBLAST |
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