Transcription Factor
| Accessions: | T22039 (AthalianaCistrome v4_May2016), Q9FIW9 (JASPAR 2024), ZHD10 (EEADannot 2023-12-22) |
| Names: | AT5G39760, ATHB23, T22039;, AtHB-23, AtZHD10, Homeobox protein 23, ZHD10_ARATH, Zinc-finger homeodomain protein 10, Q9FIW9 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2, EEADannot 2023-12-22 3 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:ZF-HD, family:ZHD |
| Length: | 334 |
| Pfam Domains: | 54-110 ZF-HD protein dimerisation region |
| Sequence: (in bold interface residues) | 1 MMDMTPTITTTTTPTPKSPEPESETPTRIQPAKPISFSNGIIKRHHHHHHPLLFTYKECL 60 61 KNHAAALGGHALDGCGEFMPSPSSISSDPTSLKCAACGCHRNFHRRDPDNNNDSSQIPPP 120 121 PSTAVEYQPHHRHHPPPPPPPPPPRSPNSASPPPISSSYMLLSLSGTNNNNNNLASFSDL 180 181 NFSAGNNHHHHHQHTLHGSRKRFRTKFSQFQKEKMHEFAERVGWKMQKRDEDDVRDFCRQ 240 241 IGVDKSVLKVWMHNNKNTFNRRDIAGNEIRQIDNGGGNHTPILAGEINNHNNGHHGVGGG 300 301 GELHQSVSSGGGGGGFDSDSGGANGGNVNGSSSS |
| Interface Residues: | 202, 204, 250, 253, 254 |
| 3D-footprint Homologues: | 3lnq_A, 4xrs_G |
| Binding Motifs: | M0851 wwwhwTAATTARtwawwwawww M0855 hwTAATTArtt MA1807.1 hwTAATTArtt EEAD0064 GmCACGTG EEAD0063 wwwwwTGGGCytwww EEAD0065 TATATATATA MA1807.2 TAATTArt |
| Publications: | Hong SY, Kim OK, Kim SG, Yang MS, Park CM. Nuclear import and DNA binding of the ZHD5 transcription factor is modulated by a competitive peptide inhibitor in Arabidopsis. J Biol Chem 286:1659-68 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.