Transcription Factor
| Accessions: | T085127_1.02 (CISBP 1.02) |
| Names: | nit-2, T085127_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:GATA |
| Length: | 1036 |
| Pfam Domains: | 169-196 Fungal protein of unknown function (DUF1752) 743-776 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MAASTTTPTATTRPFFTMNPTTTEHDFRFPRRPGDSMAGTGLGGAAMSSSSANNNHNQHH 60 61 PMSAFNHHHHHNAAGSARGRDSDGRPSSSNNNTSNGFVANINHQSSSNNNISKNIPPPTS 120 121 DYHTQSASNGAAAYDLLRSSAFPPFQDGLAGMTQSPDEMQKQDPLATQVWKYFAKTKLAL 180 181 PNQERMENLTWRMMAKPLQTYRRQMETDRTHRFSESAPQKSTSGIARLRKSSEQTQSQGS 240 241 DLMNLDDFINGENISTPAGLSLAPSPETSSKMADDRTAHHSTASAIPIKARKDQQSQHMI 300 301 PQSVPAALHHPRMQTEFGYLPRHLRKTSIDETSKRNPNRKRPADFSPHVSAVTPSYVTNG 360 361 LDADTDLHDYSLDHTSHDGLPPQTAPSSVPYALDTVGLDADTFITSAGPFQQNFSFSPST 420 421 SPMVSHDPFTAMFGPNNSSMHSGPINGNNFYSPPASAFQSTASTPHPMNEGGDNFYFGVD 480 481 MRRARQQPYQPGNHGMGNAMAHQFPYAGNGNMMFPASSAGQDPTPSFAAPNSFSGHIDPT 540 541 QVFHNEQAVRSPGMSVLQDSLFTFGAESDGDEEDGGAFADRNLSISHDFSSQGMEEPAFD 600 601 SPSMGWDPSLPGNFSTQAARYPGGPPRKQVTIGATTTDYVDNTGEWDGSGLPRSQSQSFR 660 661 QSDLRKGKMSRTASTPGLSARMNPFERLAQSASHSPPADVGRSSGLSSVPASRPSSPPPG 720 721 AKQGSTTNLQGAAGNSTDTPTTCTNCFTQTTPLWRRNPDGQPLCNACGLFLKLHGVVRPL 780 781 SLKTDVIKKRNRGSGASLPVGGTSTRSKKNASMSAAARKNSTLSITSNANNQPPAQVATP 840 841 PAQQQVRASSVNESESPASGPASGGNTAGSTPTSYHGSTGSTSGAVGGKSVIPIASAPPK 900 901 SAPGPGAGSMSRRDTISSKRQRRHSKSAGSDQPVSAGAVSSSGMDVDSPANSTGSNETMP 960 961 TFNPGGAFSGLPPTTQSSLGFGNGYINTPRPMVGPGGMMGMPNGQAGQMMGASSSSGPGS 1020 1021 GPSRTGAEWEWLTMSL |
| Interface Residues: | 752, 753, 755, 765, 769, 770, 773, 790, 792 |
| 3D-footprint Homologues: | 3dfx_B, 1gat_A, 3vd6_C, 4gat_A |
| Binding Motifs: | M0792_1.02 shGATwrs |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.