Transcription Factor
| Accessions: | T00491 (AthalianaCistrome v4_May2016), Q9SGS2 (JASPAR 2024) |
| Names: | At1g76110, T00491;, High mobility group B protein 9, HMGB9_ARATH, Nucleosome/chromatin assembly factor group D 09, Nucleosome/chromatin assembly factor group D 9, Protein NUCLEAR FUSION DEFECTIVE 9 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:ARID |
| Length: | 338 |
| Pfam Domains: | 40-125 ARID/BRIGHT DNA binding domain 252-317 Domain of unknown function (DUF1898) 255-322 HMG (high mobility group) box |
| Sequence: (in bold interface residues) | 1 MSSDNESTPSQATVEMMATSPAKIKEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFM 60 61 IPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNL 120 121 LFHYEQVHLFTARGPLLHPIATFHANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTA 180 181 IGTIEGKFDCGYLVKVKLGSEILNGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRL 240 241 GKRRRSRRREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEER 300 301 MVYQDIGLKDKERYQRELNEYRETLRLRDGDMTNGKAF |
| Interface Residues: | 94, 107, 108, 111, 112, 257, 260, 262, 263, 266, 270, 271, 276, 278, 279, 282, 285 |
| 3D-footprint Homologues: | 2oeh_A, 1kqq_A, 1j5n_A, 3tmm_A, 2gzk_A, 7zie_A, 1ckt_A, 7m5w_A |
| Binding Motifs: | M0145 ATtwawaATTwAATt M0146 wwwAWTTAATt UN0401.1 wwwAWTTAATt UN0401.2 AWTTAAT |
| Related annotations: | PaperBLAST |
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