Transcription Factor

						

			
Accessions: T138456_1.02 (CISBP 1.02)

			
Names: nfatc1, T138456_1.02;
Organisms: Xenopus (Silurana) tropicalis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Rel
Length: 667
Pfam Domains:   385-545 Rel homology domain (RHD)
  562-650 IPT/TIG domain
Sequence: 
(in bold interface residues)		   1 HFNYASSNLSASLSLGVTNSSLSNPCHGLQSSNPVISIIPSSSHPPGYGGNLDSEATGYY   60
  61 LSPSIRPVGPPALESPRIEITSCLAMHPNHNQFFNEPDIEEAIPQAKRIHSTATLNLPNV  120
 121 DTYRDPSCLSPASSLSSRSCNSEASSFESNYSYPFTSPQTSPWQSPCVSPKTTDPEEGYQ  180
 181 RSMVTCTLLSSPRHSPSTSPRTSISEENWLNAPSSRPSSPCIKRKYSLNGRQTSYSPHHS  240
 241 PTPSPHNSPRVSVTDETWLGNTHQYTSSAIVAAINALTTDPTDMNDGIPIKSRKTAADHT  300
 301 PNMSLKTEPVCDDHSTMSSTNDLSPDDYSGFHHIRKGNFCDQYLSVPQQSYQWAKPKNIS  360
 361 PTSYLSPSLPALDWHLPSQSGPYELRIEVQPKSHHRAHYETEGSRGAVKASTGGHPIVQL  420
 421 HGYLENEPLTIQLFIGTADDRLLRPHAFYQVHRITGKTVSTTSHETIISNTKVLEIPLLP  480
 481 ENNMRAIIDCAGILKLRNSDIELRKGETDIGRKNTRVRLVFRVHIPQANGRTLTLQVASN  540
 541 PIECSQRSAQELPLVEKQSTDNFPVIGGKKMILNGHNFHPDSKVIFVEKAPDGHHVWEME  600
 601 AKTDKEMFKPNTLVVEIPPFRNQRISSPVQVNFYVCNGKRKRSQYQIFTYLPANGNILHH  660
 661 EHLSLYT
Interface Residues: 396, 398, 399, 401, 402, 405, 495, 512, 546, 547, 639, 640
3D-footprint Homologues: 1a66_A, 1imh_C, 1p7h_L
Binding Motifs: M1523_1.02 wwTTTCCryy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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