Transcription Factor
Accessions: | T14816 (AthalianaCistrome v4_May2016), Q94JR1 (JASPAR 2024) |
Names: | AT3G10030, T14816;, Aspartate/glutamate/uridylate kinase family protein, AT3g10030/T22K18_15, EC 2.7.4.22, Q94JR1_ARATH, Uridine monophosphate kinase, Uridylate kinase |
Organisms: | Arabidopsis thaliana |
Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix |
Length: | 542 |
Pfam Domains: | 158-248 Myb/SANT-like DNA-binding domain 168-246 Alcohol dehydrogenase transcription factor Myb/SANT-like 304-514 Amino acid kinase family |
Sequence: (in bold interface residues) | 1 MASCDDDFSLLGDDQSNPNQHHHHHQVLHHTPYAPRRFNPKPSNQILLPHHQRNGDEDDE 60 61 NDVVVEASSAFHGHGVNPFTADENSNPYDDNNAAVDEDEDEDLGANRSRIGGVRVEKRQS 120 121 QEELSDGGTTNGGEITPYGSFKRPRTSSSSAGEYRKDREEWSDAAIACLLDAYSDKFTQL 180 181 NRGNLRGRDWEEVASSVSERCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSGGTAASHWP 240 241 WFKKMEDIVGNSLALKGASDEDRSGSSMGNTVKPARRYPLVTYNPGVQINNVKSKATSNP 300 301 RWRRVVLKISGAALACTGPNNIDPKVINLIAREVAMACRLGVEVAIVVGSRNFFCGSTWV 360 361 TATGLDRTTAYHISMMASVMNSALLQSSLEKIGVQARLQTAISVQGVGEPYNRQRATRHL 420 421 DKGRVVIFGGIGATLGNPLLSSDASAALRAIDINAEAVVKGTNVDGVYDCHSQDSNVTFE 480 481 HISFQDLASRGLTSMDTMALNFCEENSIPVVVFNFLEAGNITKALCGEQVGTLIDRSGRG 540 541 VS |
Interface Residues: | 180, 199, 228, 260, 362, 363, 364, 367, 368 |
3D-footprint Homologues: | 4h5q_B, 1dmu_A, 4fm9_A, 4m9v_C |
Binding Motifs: | M0779 arTTAACGGcgktwa M0781 adtTAACGGCGtya MA1662.1 hdTTAACAGAaww MA1662.2 TTAACAGA |
Binding Sites: | MA1662.1.1 MA1662.1.10 / MA1662.1.4 MA1662.1.11 / MA1662.1.5 MA1662.1.12 MA1662.1.13 MA1662.1.14 MA1662.1.15 MA1662.1.16 / MA1662.1.6 MA1662.1.17 MA1662.1.18 MA1662.1.19 MA1662.1.2 MA1662.1.20 / MA1662.1.7 MA1662.1.3 MA1662.1.4 MA1662.1.5 MA1662.1.6 MA1662.1.7 MA1662.1.8 MA1662.1.9 MA1662.1.10 MA1662.1.11 MA1662.1.12 MA1662.1.13 MA1662.1.14 MA1662.1.15 MA1662.1.16 MA1662.1.17 MA1662.1.18 MA1662.1.19 MA1662.1.20 MA1662.1.3 MA1662.1.8 MA1662.1.9 MA1662.2.1 / MA1662.2.12 / MA1662.2.13 / MA1662.2.17 / MA1662.2.18 / MA1662.2.2 / MA1662.2.5 MA1662.2.10 / MA1662.2.7 MA1662.2.11 / MA1662.2.6 MA1662.2.14 / MA1662.2.15 / MA1662.2.16 / MA1662.2.4 / MA1662.2.8 / MA1662.2.9 MA1662.2.19 MA1662.2.20 MA1662.2.3 |
Publications: | Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Similarity regression predicts evolution of transcription factor sequence specificity. Nat Genet 51:981-989 (2019). [Pubmed] |
Related annotations: | PaperBLAST |
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