Transcription Factor

Accessions: T14816 (AthalianaCistrome v4_May2016), Q94JR1 (JASPAR 2024)
Names: AT3G10030, T14816;, Aspartate/glutamate/uridylate kinase family protein, AT3g10030/T22K18_15, EC 2.7.4.22, Q94JR1_ARATH, Uridine monophosphate kinase, Uridylate kinase
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix
Length: 542
Pfam Domains: 158-248 Myb/SANT-like DNA-binding domain
168-246 Alcohol dehydrogenase transcription factor Myb/SANT-like
304-514 Amino acid kinase family
Sequence:
(in bold interface residues)
1 MASCDDDFSLLGDDQSNPNQHHHHHQVLHHTPYAPRRFNPKPSNQILLPHHQRNGDEDDE 60
61 NDVVVEASSAFHGHGVNPFTADENSNPYDDNNAAVDEDEDEDLGANRSRIGGVRVEKRQS 120
121 QEELSDGGTTNGGEITPYGSFKRPRTSSSSAGEYRKDREEWSDAAIACLLDAYSDKFTQL 180
181 NRGNLRGRDWEEVASSVSERCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSGGTAASHWP 240
241 WFKKMEDIVGNSLALKGASDEDRSGSSMGNTVKPARRYPLVTYNPGVQINNVKSKATSNP 300
301 RWRRVVLKISGAALACTGPNNIDPKVINLIAREVAMACRLGVEVAIVVGSRNFFCGSTWV 360
361 TATGLDRTTAYHISMMASVMNSALLQSSLEKIGVQARLQTAISVQGVGEPYNRQRATRHL 420
421 DKGRVVIFGGIGATLGNPLLSSDASAALRAIDINAEAVVKGTNVDGVYDCHSQDSNVTFE 480
481 HISFQDLASRGLTSMDTMALNFCEENSIPVVVFNFLEAGNITKALCGEQVGTLIDRSGRG 540
541 VS
Interface Residues: 180, 199, 228, 260, 362, 363, 364, 367, 368
3D-footprint Homologues: 4h5q_B, 1dmu_A, 4fm9_A, 4m9v_C
Binding Motifs: M0779 arTTAACGGcgktwa
M0781 adtTAACGGCGtya
MA1662.1 hdTTAACAGAaww
MA1662.2 TTAACAGA
Binding Sites: MA1662.1.1
MA1662.1.10 / MA1662.1.4
MA1662.1.11 / MA1662.1.5
MA1662.1.12
MA1662.1.13
MA1662.1.14
MA1662.1.15
MA1662.1.16 / MA1662.1.6
MA1662.1.17
MA1662.1.18
MA1662.1.19
MA1662.1.2
MA1662.1.20 / MA1662.1.7
MA1662.1.3
MA1662.1.4
MA1662.1.5
MA1662.1.6
MA1662.1.7
MA1662.1.8
MA1662.1.9
MA1662.1.10
MA1662.1.11
MA1662.1.12
MA1662.1.13
MA1662.1.14
MA1662.1.15
MA1662.1.16
MA1662.1.17
MA1662.1.18
MA1662.1.19
MA1662.1.20
MA1662.1.3
MA1662.1.8
MA1662.1.9
MA1662.2.1 / MA1662.2.12 / MA1662.2.13 / MA1662.2.17 / MA1662.2.18 / MA1662.2.2 / MA1662.2.5
MA1662.2.10 / MA1662.2.7
MA1662.2.11 / MA1662.2.6
MA1662.2.14 / MA1662.2.15 / MA1662.2.16 / MA1662.2.4 / MA1662.2.8 / MA1662.2.9
MA1662.2.19
MA1662.2.20
MA1662.2.3
Publications: Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Similarity regression predicts evolution of transcription factor sequence specificity. Nat Genet 51:981-989 (2019). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.