Transcription Factor

						

			
Accessions: T104621_1.02 (CISBP 1.02)

			
Names: eyg-1, T104621_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain,Paired box
Length: 314
Pfam Domains:    47-101 'Paired box' domain
  206-260 Homeobox domain
  223-256 Homeobox KN domain
Sequence: 
(in bold interface residues)		   1 MAAQQPLSQEQLLHFWGAHNTMGKMTRRTSQSDGGKPSGNSNAAGGAGTKPKVATPQVVA   60
  61 KIEQYKRDNPTIFAWEIREKLISEDVCTTPPSVSSINRILRTRAAERAAEELQMILSAQH  120
 121 LARPRAQQVRLPPAFPFPFPLVWPGLLPNPAQLSLLLNSGALAPPVQSGGAGGPGVFGNS  180
 181 GQISVDSNLNLSEDDSTLGANARRLSRSTFTNEQLQSLEEVFLRDPYPSPNERADLVKRT  240
 241 NLPEARIQVWFSNRRAKWRKTNANGSDRDELRAERSETDDALSISSQSPSPGGGQETGSD  300
 301 EGKKKTITLFKPYE
Interface Residues: 18, 19, 21, 23, 24, 44, 49, 52, 92, 93, 94, 95, 97, 98, 101, 183, 187, 204, 205, 206, 207, 245, 246, 248, 249, 252, 253, 255, 256, 257, 259, 260, 287
3D-footprint Homologues: 1pdn_C, 1k78_A, 6pax_A, 1au7_A, 5zfz_A, 3d1n_M, 8ejp_B, 6a8r_A, 1fjl_B, 8pmf_A, 1puf_A, 3cmy_A, 1zq3_P, 2lkx_A, 1nk2_P, 2ld5_A, 1ig7_A, 4cyc_A, 9b8u_A, 1puf_B, 5flv_I, 8ik5_C, 1jgg_B, 5zjt_E, 5hod_A, 3lnq_A, 8osb_E, 7q3o_C, 3a01_E, 2hdd_A, 8eml_B, 6m3d_C, 5jlw_D, 3rkq_B, 2r5y_A, 6es3_K, 1b72_A, 4xrs_G, 2hos_A, 2xsd_C, 1le8_A, 1e3o_C, 7xrc_C, 8bx1_A, 6fqp_B, 1du0_A, 1o4x_A, 7psx_B, 4qtr_D, 1le8_B, 6fqq_E, 1k61_B, 4xrm_B, 1mnm_C, 8g87_X, 2ypa_A
Binding Motifs: M1225_1.02 rwTAATyrg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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