Transcription Factor
| Accessions: | AL1G24970.t1 (EEADannot 2026-03-04) |
| Names: | RAV1 |
| Organisms: | Arabidopsis lyrata |
| Libraries: | EEADannot 2026-03-04 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:B3 RAV |
| Length: | 344 |
| Pfam Domains: | 60-108 AP2 domain 188-291 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MEVSSVDESTTSTGSICETPAITPAKKSSVGNLYRMGSGSSVVLDSENGVEAESRKLPSS 60 61 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRGRDAVTNFKDVRM 120 121 DEDEVEFLNSHSKSEIVDMLRKHTYNEELDQSKRRRNGNGNMVRTMLTSGLSNDGVSTTE 180 181 FRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRF 240 241 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLETGR 300 301 VLRLFGVNISPESSRNDVVGNKRVNDTEMLSLVCSKKQRIFHAS |
| Interface Residues: | 66, 68, 70, 74, 76, 78, 83, 85, 193, 195, 200, 201, 202, 204, 245, 246, 247, 248, 250 |
| 3D-footprint Homologues: | 7wq5_A, 1gcc_A, 5wx9_A, 6j9b_A, 6j9c_D, 6ycq_A, 6fas_B, 7et6_A, 8oj2_A |
| Binding Motifs: | EEAD0580 CAGGTGwTTTyTgtt |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.