Transcription Factor
| Accessions: | T100293_1.02 (CISBP 1.02) |
| Names: | SNAPOd2T00006620001, T100293_1.02; |
| Organisms: | Oikopleura dioica |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 281 |
| Pfam Domains: | 86-142 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MEELAKFVSGQFSAPKHSNERCFKDVLQTQESSSPSHEEADQPQRIRLFRPHEHVPANAL 60 61 DLSPTSIHHQDAQISPDLSKDKQKQRRSRTNFTMEQIHALESLFEQTHYPDAFMREELSQ 120 121 NLGLSEARVQVWFQNRRAKSRKQESCEATSASLPGTLRQHARMTGFSMRSSSALHCRPQI 180 181 AVQPPIQLCDELVSRSLFSAYHQANDSAQFARISALLQLQRLRQPALISPLLRFPPLFHI 240 241 PPVQLPCTLPDNQAQANVTDADAVKDEKDENEDNKDLDVVQ |
| Interface Residues: | 62, 63, 64, 65, 66, 68, 69, 85, 86, 87, 88, 89, 127, 128, 130, 131, 134, 135, 137, 138, 139, 142 |
| 3D-footprint Homologues: | 1au7_A, 1e3o_C, 4j19_B, 8ejp_B, 1ig7_A, 6fqp_B, 8pmf_A, 1puf_A, 6a8r_A, 3cmy_A, 1fjl_B, 3d1n_M, 5zfz_A, 1zq3_P, 3lnq_A, 1jgg_B, 6m3d_C, 2lkx_A, 1nk2_P, 2ld5_A, 7q3o_C, 6es3_K, 5flv_I, 8osb_E, 5zjt_E, 3a01_E, 2d5v_B, 8eml_B, 5hod_A, 3rkq_B, 2hdd_A, 6wig_A, 5jlw_D, 4cyc_A, 2r5y_A, 9b8u_A, 1puf_B, 4xrs_G, 2hos_A, 8ik5_C, 7psx_B, 1b72_A, 2xsd_C, 7xrc_C, 1le8_A, 1o4x_A, 1du0_A, 4qtr_D, 4xrm_B, 8g87_X, 8bx1_A |
| Binding Motifs: | M1154_1.02 yTAATTrr |
| Related annotations: | PaperBLAST |
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