Transcription Factor

						

			
Accessions: SP3_MOUSE (HOCOMOCO 10)

			
Names: SP3_MOUSE
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Length: 783
Pfam Domains:   623-647 Zinc finger, C2H2 type
  623-647 C2H2-type zinc finger
  639-666 Zinc-finger double domain
  653-677 Zinc finger, C2H2 type
  653-677 C2H2-type zinc finger
  670-692 Zinc-finger double domain
  683-705 C2H2-type zinc finger
  683-705 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MTAPEKPVKQEEMAALDVDGGGGGGGHGEYLQQQQQQQQQHGNGAAAAAAQDTQPSPLAL   60
  61 LAATCSKIGPPSPGDDDEEAAVAAAAGVPAAAAGATGDLASAQLGGAPNRWEVLSATPTT  120
 121 IKDEAGNLVQIPGAATSSGQYVLPLQNLQNQQIFSVAPGSDSSNGTVSNVQYQVIPQIQS  180
 181 TDAQQVQIGFTGSSDNGGINQENSQIQIIPGSNQTLLASGTPPANIQNLIPQTGQVQVQG  240
 241 VAIGGSSFPGQTQVVANVPLGLPGNITFVPINSVDLDSLGLSGSSQTMTAGINADGHLIN  300
 301 TGQAMDSSDNSERTGERVSPDVNETNADTDLFVPTSSSSQLPVTIDSTGILQQNTNSLTT  360
 361 TSGQVHSSDLQGNYIQSPVSEETQAQNIQVSTAQPVVQHLQLQDSQQPTSQAQIVQGITP  420
 421 QTIHGVQASGQNISQQALQNLQLQLNPGTFLIQAQTVTPSGQITWQTFQVQGVQNLQNLQ  480
 481 IQNTAAQQITLTPVQTLTLGQVAAGGALTSTPVSLSTGQLPNLQTVTVNSIDSTGIQLHP  540
 541 GENADSPADIRIKEEEPDPEEWQLSGDSTLNTNDLTHLRVQVVDEEGDQQHQEGKRLRRV  600
 601 ACTCPNCKEGGGRGTNLGKKKQHICHIPGCGKVYGKTSHLRAHLRWHSGERPFICNWMFC  660
 661 GKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQNKKVIHSSSTVLAS  720
 721 VEAGRDDALITAGGTTLILANIQQGSVSGIGTVNTSATSNQDILTNTEIPLQLVTVSGNE  780
 781 TME
Interface Residues: 570, 571, 613, 615, 616, 618, 619, 622, 635, 636, 637, 638, 639, 641, 642, 644, 645, 648, 665, 666, 667, 668, 669, 671, 672, 673, 676, 693, 694, 695, 696, 697, 698, 699, 700, 701, 704, 724, 725, 727, 749, 752
3D-footprint Homologues: 5xfr_B, 7w1m_H, 5v3j_F, 6ml4_A, 5yel_A, 1tf3_A, 8cuc_F, 7n5w_A, 6jnm_A, 7ysf_A, 4x9j_A, 2gli_A, 8ssq_A, 6blw_A, 5kkq_D, 1tf6_A, 6u9q_A, 5ei9_F, 8ssu_A, 1g2f_F, 5kl3_A, 1ubd_C, 8gn3_A, 5k5i_A, 2kmk_A, 5k5l_F, 8h9h_G, 6e94_A, 7y3m_I, 2lt7_A, 6a57_A, 2jpa_A, 7y3l_A, 3uk3_C, 1f2i_J, 2wbs_A, 1llm_D, 2drp_D, 7txc_E, 4m9v_C, 5yj3_D
Binding Motifs: SP3_MOUSE.H10MO.B|M01354 gggrggGGGcGGGGcsrgsg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.