Transcription Factor
| Accessions: | T02284 (AthalianaCistrome v4_May2016), F4HY61 (JASPAR 2024) |
| Names: | AT1G28470, SND3, T02284;, ANAC010, NAC domain-containing protein 10, NAC10_ARATH, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 314 |
| Pfam Domains: | 77-217 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSWCDGSDDNYDLNLERVSNTDHPSVQLKDQSQSCVTSRPDSKISAETPITTCPSCGHKL 60 61 HHHQDDQVGSIKDLPSLPAGVKFDPSDKEILMHLEAKVSSDKRKLHPLIDEFIPTLEGEN 120 121 GICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVSTDEEGHETRWHKTGKTRPV 180 181 LSQSGETGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSSEDEKDGEPVLSKVFYQTQPR 240 241 QCGSMEPKPKNLVNLNRFSYENIQAGFGYEHGGKSEETTQVIRELVVREGDGSCSFLSFT 300 301 CDASKGKESFMKNQ |
| Interface Residues: | 150, 155, 160, 172, 174, 176, 196, 202, 203, 204, 207 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0626 gTwdCTTswtcywyAmGywwch M0629 wrCkTrwdgawsAMG UN0371.1 wwggTwgCkTGTddcaCAAGttwy MA2009.1 rTaaCTTGTkvcACAAGtwAccww MA2009.2 TaaCTTGTkvcACAAGtwAcc |
| Binding Sites: | UN0371.1.11 UN0371.1.12 UN0371.1.13 UN0371.1.14 UN0371.1.15 UN0371.1.3 UN0371.1.4 UN0371.1.18 UN0371.1.19 UN0371.1.20 UN0371.1.5 UN0371.1.1 UN0371.1.10 UN0371.1.16 UN0371.1.17 UN0371.1.2 UN0371.1.6 UN0371.1.7 UN0371.1.8 UN0371.1.9 MA2009.1.1 MA2009.1.10 MA2009.1.11 MA2009.1.12 MA2009.1.13 MA2009.1.14 MA2009.1.15 MA2009.1.16 MA2009.1.17 MA2009.1.18 MA2009.1.19 MA2009.1.2 MA2009.1.20 MA2009.1.3 MA2009.1.4 MA2009.1.5 MA2009.1.6 MA2009.1.7 MA2009.1.8 MA2009.1.9 MA2009.2.1 MA2009.2.10 MA2009.2.11 MA2009.2.12 MA2009.2.13 MA2009.2.14 MA2009.2.15 MA2009.2.16 MA2009.2.17 MA2009.2.18 MA2009.2.19 MA2009.2.2 MA2009.2.20 MA2009.2.3 MA2009.2.4 MA2009.2.5 MA2009.2.6 MA2009.2.7 MA2009.2.8 MA2009.2.9 |
| Publications: | Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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