Transcription Factor

Accessions: T02284 (AthalianaCistrome v4_May2016), F4HY61 (JASPAR 2024)
Names: AT1G28470, SND3, T02284;, ANAC010, NAC domain-containing protein 10, NAC10_ARATH, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC
Length: 314
Pfam Domains: 77-217 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MSWCDGSDDNYDLNLERVSNTDHPSVQLKDQSQSCVTSRPDSKISAETPITTCPSCGHKL 60
61 HHHQDDQVGSIKDLPSLPAGVKFDPSDKEILMHLEAKVSSDKRKLHPLIDEFIPTLEGEN 120
121 GICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVSTDEEGHETRWHKTGKTRPV 180
181 LSQSGETGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSSEDEKDGEPVLSKVFYQTQPR 240
241 QCGSMEPKPKNLVNLNRFSYENIQAGFGYEHGGKSEETTQVIRELVVREGDGSCSFLSFT 300
301 CDASKGKESFMKNQ
Interface Residues: 150, 155, 160, 172, 174, 176, 196, 202, 203, 204, 207
3D-footprint Homologues: 7xp3_B, 3swp_A
Binding Motifs: M0626 gTwdCTTswtcywyAmGywwch
M0629 wrCkTrwdgawsAMG
UN0371.1 wwggTwgCkTGTddcaCAAGttwy
MA2009.1 rTaaCTTGTkvcACAAGtwAccww
MA2009.2 TaaCTTGTkvcACAAGtwAcc
Binding Sites: UN0371.1.11
UN0371.1.12
UN0371.1.13
UN0371.1.14
UN0371.1.15
UN0371.1.3
UN0371.1.4
UN0371.1.18
UN0371.1.19
UN0371.1.20
UN0371.1.5
UN0371.1.1
UN0371.1.10
UN0371.1.16
UN0371.1.17
UN0371.1.2
UN0371.1.6
UN0371.1.7
UN0371.1.8
UN0371.1.9
MA2009.1.1
MA2009.1.10
MA2009.1.11
MA2009.1.12
MA2009.1.13
MA2009.1.14
MA2009.1.15
MA2009.1.16
MA2009.1.17
MA2009.1.18
MA2009.1.19
MA2009.1.2
MA2009.1.20
MA2009.1.3
MA2009.1.4
MA2009.1.5
MA2009.1.6
MA2009.1.7
MA2009.1.8
MA2009.1.9
MA2009.2.1
MA2009.2.10
MA2009.2.11
MA2009.2.12
MA2009.2.13
MA2009.2.14
MA2009.2.15
MA2009.2.16
MA2009.2.17
MA2009.2.18
MA2009.2.19
MA2009.2.2
MA2009.2.20
MA2009.2.3
MA2009.2.4
MA2009.2.5
MA2009.2.6
MA2009.2.7
MA2009.2.8
MA2009.2.9
Publications: Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.