Transcription Factor

						

			
Accessions: T057717_1.02 (CISBP 1.02)

			
Names: D19B, T057717_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 774
Pfam Domains:     12-82 Zinc-finger associated domain (zf-AD)  
  281-303 C2H2-type zinc finger
  313-338 Zinc finger, C2H2 type
  313-338 C2H2-type zinc finger
  330-357 Zinc-finger double domain
  347-369 C2H2-type zinc finger
  361-385 Zinc-finger double domain
  376-398 Zinc finger, C2H2 type
  376-398 C2H2-type zinc finger
  404-426 C2H2-type zinc finger
  420-440 Zinc-finger double domain
  446-471 Zinc-finger double domain
  461-483 C2H2-type zinc finger
  490-511 C2H2-type zinc finger
  584-607 C2H2-type zinc finger
  584-607 Zinc finger, C2H2 type
  628-651 Zinc-finger double domain
  641-663 C2H2-type zinc finger
  641-663 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MNEESQYSIHTVCRTCLSTVDDSAAYDLFRVPGLAKKLCVCTSLSVEQADGFPKNLCNVC   60
  61 FSKLNDLHDFQKQCVDSVQKFQDLVASNAFACQTNFDVLDTSAAVADLPGEEEDNVHFDP  120
 121 LLNSKIEIIENEEDVFKMLESVEKEVEEVEMEMEQPFGRVSQDDSFESGNDNDLDADFQI  180
 181 SSDDDIPLAQRSRRGATRGSKAKGKPKSAAKRQEEESEESEETSSSDDSDGNPKDKPKRK  240
 241 RIPATERDRHRLIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTANGLRV  300
 301 HVEHAHTETSAMHPCTYEGCNKSFARPVLLSFHMKRVHKVDTPQRDFPCTECEKVFRCPT  360
 361 ALKKHMYKHTGEELPFACEICGKRFPINSVLRDHLLRHAGIKNHVCPYCGVGKTTRQEWN  420
 421 KHILTHTKEKKYECRQCDHASHNKQALANHVKVVHEKRKDFACQYCGKTFGKSHACKIHE  480
 481 RSHTGEKCCECKICGKVFLFEKGLTKHLKTHEKRDLPKTQGTNALMGDGASGSSTIAKPS  540
 541 PHLRGRVERVDIAQLAGTVANPIPSVNLPSWSPQVNFTKKEGQHICPDCGKGFNHVSNMK  600
 601 LHYKVVHQKVKDFCCRFCPKRFAKKQYLRHHEYIHTGEKPYECKVCGKHFRQEQVLKTHM  660
 661 KVHDKPPRPPGKPKEPAGPKAESSTAVKRQQPKNFEQYQDPAAERAAATAELLAYQIEEN  720
 721 EAKRKAEAELRKIQEAAFEQLNKLQKQSNTYDGFYAQKAEAEGTSVDALKLDHV
Interface Residues: 264, 266, 267, 294, 296, 297, 300, 303, 304, 325, 326, 327, 328, 329, 332, 336, 358, 359, 360, 361, 363, 364, 386, 387, 388, 389, 390, 392, 393, 397, 414, 415, 416, 417, 418, 419, 420, 421, 424, 443, 444, 445, 446, 448, 449, 471, 472, 474, 475, 478, 500, 501, 502, 503, 504, 506, 520, 523, 526, 531, 532, 534, 549, 550, 551, 566, 569, 594, 595, 596, 597, 598, 600, 601, 603, 604, 608, 622, 623, 624, 625, 626, 627, 629, 630, 631, 634, 651, 652, 653, 654, 655, 656, 657, 658, 659
3D-footprint Homologues: 2gli_A, 1tf6_A, 8ssu_A, 8ssq_A, 1tf3_A, 5v3j_F, 1ubd_C, 6a57_A, 5k5i_A, 6e94_A, 7y3m_I, 7w1m_H, 6jnm_A, 7txc_E, 6ml4_A, 5yel_A, 5kkq_D, 5yj3_D, 5ei9_F, 5k5l_F, 8cuc_F, 7y3l_A, 6u9q_A, 7n5w_A, 4x9j_A, 1g2f_F, 5kl3_A, 2kmk_A, 7ysf_A, 2drp_D, 6blw_A, 8h9h_G, 2lt7_A, 2jpa_A, 3uk3_C, 1f2i_J, 2wbs_A, 8gn3_A, 1llm_D, 4m9v_C
Binding Motifs: M4902_1.02 TaCAGGGTA
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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