Transcription Factor

						

			
Accessions: AuxinResponseFactor39 (EEADannot 2023-12-22)

			
Names: ARF39, GRMZM2G017187
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Notes: family:ARF
Length: 661
Pfam Domains:   129-229 B3 DNA binding domain
  255-340 Auxin response factor
  468-641 AUX/IAA family
Sequence: 
(in bold interface residues)		   1 MAAAMDAPNPGAAAGPGMPSDALYQELWHACAGPLVTVPRQGERVYYFPQGHMEQLEASA   60
  61 HHQQLDQYLPMFDLPPKILCRVVNVELRAEADSDEVYAQIMLQPEADQNELTSLDAEPQE  120
 121 REKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWH  180
 181 FRHIFRGQPKRHLLTTGWSVFVSSKRLVSGDAFIFMRGENGELRVGVRRLMRQVNSMPSS  240
 241 VISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFK  300
 301 MRFEGDDAPERRFSGTIIGIGSLPAMSKSLWADSDWRSLKVQWDEPSSILRPDRISPWEV  360
 361 EPLDAANPQSPQPPLRAKRPRPPASPCMVSELPSGFGLWKSPIESSCTLSFSEPQRAREL  420
 421 FPSIPTSTLSSSSNVSFNSKNEPSMLTSQFYWSARHTRADSCAASTNTVVIEKKQEPSSG  480
 481 GCRLFGINICSAEEEVLPEVTAPGVGYEQTAASVELNSDKLSQPSDVNNSDALAASSERS  540
 541 PLESQSRQVRSCTKVIMQGMAVGRAVDLTKLSGYSDLCQKLEEMFDIQGELGSTLKKWRV  600
 601 IFTDDEDDMMLVGDDPWDEFCRMVKRIYIYTYEEAKKLTSKSKLPVSSDSSKLSAANSLS  660
 661 E
Interface Residues: 136, 141, 142, 143, 145, 186, 188, 189, 191
3D-footprint Homologues: 6sdg_B, 6ycq_A, 7et6_A
Binding Motifs: EEAD0041 GGGGACA
EEAD0042 wTGTybsyywwwrrsvrACAwr
EEAD0043 TGTCgwssamktsswcGACAsr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.