Transcription Factor
| Accessions: | AuxinResponseFactor39 (EEADannot 2025-01-07) |
| Names: | ARF39, GRMZM2G017187 |
| Organisms: | Zea mays |
| Libraries: | EEADannot 2025-01-07 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:B3 ARF |
| Length: | 661 |
| Pfam Domains: | 129-229 B3 DNA binding domain 255-340 Auxin response factor 468-641 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MAAAMDAPNPGAAAGPGMPSDALYQELWHACAGPLVTVPRQGERVYYFPQGHMEQLEASA 60 61 HHQQLDQYLPMFDLPPKILCRVVNVELRAEADSDEVYAQIMLQPEADQNELTSLDAEPQE 120 121 REKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWH 180 181 FRHIFRGQPKRHLLTTGWSVFVSSKRLVSGDAFIFMRGENGELRVGVRRLMRQVNSMPSS 240 241 VISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFK 300 301 MRFEGDDAPERRFSGTIIGIGSLPAMSKSLWADSDWRSLKVQWDEPSSILRPDRISPWEV 360 361 EPLDAANPQSPQPPLRAKRPRPPASPCMVSELPSGFGLWKSPIESSCTLSFSEPQRAREL 420 421 FPSIPTSTLSSSSNVSFNSKNEPSMLTSQFYWSARHTRADSCAASTNTVVIEKKQEPSSG 480 481 GCRLFGINICSAEEEVLPEVTAPGVGYEQTAASVELNSDKLSQPSDVNNSDALAASSERS 540 541 PLESQSRQVRSCTKVIMQGMAVGRAVDLTKLSGYSDLCQKLEEMFDIQGELGSTLKKWRV 600 601 IFTDDEDDMMLVGDDPWDEFCRMVKRIYIYTYEEAKKLTSKSKLPVSSDSSKLSAANSLS 660 661 E |
| Interface Residues: | 136, 141, 142, 143, 145, 186, 188, 189, 191 |
| 3D-footprint Homologues: | 6ycq_A, 7et6_A, 8oj2_A |
| Binding Motifs: | EEAD0041 GGGGACA EEAD0042 wTGTybsyywwwrrsvrACAwr EEAD0043 TGTCgwssamktsswcGACAsr |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.