Transcription Factor
| Accessions: | T000590_1.02 (CISBP 1.02), Q9C6M5 (JASPAR 2024) |
| Names: | T000590_1.02;, TEM1, AP2/ERF and B3 domain-containing transcription repressor TEM1, Protein TEMPRANILLO 1, RAV1-like ethylene-responsive transcription factor TEM1, RAVL1_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2 |
| Length: | 361 |
| Pfam Domains: | 70-118 AP2 domain 195-302 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MEYSCVDDSSTTSESLSISTTPKPTTTTEKKLSSPPATSMRLYRMGSGGSSVVLDSENGV 60 61 ETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRD 120 121 AVTNFKSQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKFVNGDGKRSGLETA 180 181 TYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGV 240 241 LINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYI 300 301 HWKVRSSPVQTVVRLFGVNIFNVSNEKPNDVAVECVGKKRSREDDLFSLGCSKKQAIINI 360 361 L |
| Interface Residues: | 76, 78, 80, 84, 86, 88, 93, 95, 200, 202, 207, 208, 209, 211, 259, 260, 261, 262, 264 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 6j9b_A, 6ycq_A, 6fas_B, 7et6_A, 6j9c_D, 8oj2_A |
| Binding Motifs: | M0008_1.02 wATGTTGC MA1800.1 GCAACATw |
| Publications: | Kagaya Y., Ohmiya K., Hattori T. RAV1, a Novel DNA-Binding Protein, Binds to Bipartite Recognition Sequence through Two Distinct DNA-Binding Domains Uniquely Found in Higher Plants. Nucleic Acids Res. 27:470-478 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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