Transcription Factor
| Accessions: | T00284 (AthalianaCistrome v4_May2016), Q6R0A6 (JASPAR 2024) |
| Names: | AT1G79180, MYB63, T00284;, AtMYB63, Myb-related protein 63, MYB63_ARATH, Transcription factor MYB63 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 294 |
| Pfam Domains: | 16-63 Myb-like DNA-binding domain 19-78 Myb-like DNA-binding domain 69-114 Myb-like DNA-binding domain 72-125 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGKGRAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWI 60 61 NYLRPDLKRGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQ 120 121 SSGTADEPASPCSSDSVSRGKDDKSSHVEDSLNRETNHRNELSTSMSSGGSNQQDDPKID 180 181 ELRFEYIEEAYSEFNDIIIQEVDKPDLLEIPFDSDPDIWSFLDTSNSFQQSTANENSSGS 240 241 RATTEEESDEDEVKKWFKHLESELGLEEDDNQQQYKEEESSSSSLLKNYELMIH |
| Interface Residues: | 16, 51, 52, 53, 54, 56, 57, 61, 62, 69, 104, 107, 108, 111, 112, 143, 144, 146 |
| 3D-footprint Homologues: | 1w0t_A, 2kdz_A, 7xur_A, 7c4r_A, 7yoj_A |
| Binding Motifs: | M0536 ywmywhyyyCACCwACCmcmh MA2024.1 yyCACCWACCach MA2024.2 yCACCWACCac |
| Binding Sites: | MA2024.1.1 MA2024.1.4 MA2024.1.5 MA2024.1.10 MA2024.1.11 MA2024.1.12 MA2024.1.13 / MA2024.1.14 / MA2024.1.15 / MA2024.1.16 MA2024.1.17 MA2024.1.18 MA2024.1.19 MA2024.1.2 MA2024.1.20 MA2024.1.3 MA2024.1.6 MA2024.1.7 MA2024.1.8 MA2024.1.9 MA2024.2.1 / MA2024.2.10 / MA2024.2.12 MA2024.2.11 MA2024.2.13 / MA2024.2.14 / MA2024.2.15 / MA2024.2.16 MA2024.2.17 MA2024.2.18 MA2024.2.19 MA2024.2.2 MA2024.2.20 MA2024.2.3 MA2024.2.4 MA2024.2.5 MA2024.2.6 MA2024.2.7 MA2024.2.8 MA2024.2.9 |
| Publications: | Zhou J, Lee C, Zhong R, Ye ZH. MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell 21:248-66 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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