Transcription Factor
| Accessions: | T060871_1.02 (CISBP 1.02) |
| Names: | K11D2.4, T060871_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 318 |
| Pfam Domains: | 80-101 C2H2-type zinc finger 80-101 Zinc finger, C2H2 type 93-117 Zinc-finger double domain 107-129 C2H2-type zinc finger 107-129 Zinc finger, C2H2 type 122-146 Zinc-finger double domain 135-157 C2H2-type zinc finger 135-157 Zinc finger, C2H2 type 149-173 Zinc-finger double domain |
| Sequence: (in bold interface residues) | 1 MMMKQEHGGGASNAPQPTPTHFTDFDYMNMMQPIHLAAIGRHSSQGGSERHLSTESSVTQ 60 61 APAPVPTTKRSRSTHDGLMKCQYCPKKVNSEAALERHMSECRMIRPHECDRCGKRFKARG 120 121 GLQQHMRIHNNEKAYVCTFCAKSFTQKSHLDQHERIHTGVKPFLCAFCGRSFRQRSQQIG 180 181 HESTHLTHFSTSSAQQTPTHGGGGGQTTPSSSASSGSSGSKGDDGAQYNGMLLHPSPPTP 240 241 SPEQQQNHLNMAAAVMQMHHHAARQHHEISSLLGLNHEFVHQHVGGVSAHATAHQFGGQQ 300 301 SAAEATVNGMRMLSHIAS |
| Interface Residues: | 90, 92, 93, 96, 117, 118, 119, 120, 121, 123, 124, 128, 130, 144, 145, 146, 147, 148, 149, 151, 152, 153, 156, 173, 174, 175, 176, 177, 178, 180, 181 |
| 3D-footprint Homologues: | 6ml4_A, 5k5i_A, 7ysf_A, 6e94_A, 1ubd_C, 3uk3_C, 8cuc_F, 1tf3_A, 7n5w_A, 6jnm_A, 7txc_E, 5ei9_F, 2jpa_A, 1g2f_F, 6blw_A, 2kmk_A, 6u9q_A, 5kkq_D, 8gn3_A, 4x9j_A, 2gli_A, 1f2i_J, 5kl3_A, 1tf6_A, 8h9h_G, 2lt7_A, 7y3m_I, 6a57_A, 7w1m_H, 7y3l_A, 5v3j_F, 8ssq_A, 1llm_D, 5yel_A, 2drp_D, 5yj3_D, 2wbs_A, 4m9v_C |
| Binding Motifs: | M0459_1.02 akAAAAAasw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.