Transcription Factor
| Accessions: | T10898 (AthalianaCistrome v4_May2016), F4IRB4 (JASPAR 2024) |
| Names: | AT2G02820, MYB88, T10898;, AtMYB88, Myb-related protein 88, MYB88_ARATH, Transcription factor MYB88 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 484 |
| Pfam Domains: | 32-76 Myb-like DNA-binding domain 33-93 Myb-like DNA-binding domain 82-125 Myb-like DNA-binding domain 85-133 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEETTKQNNMKKKKKILLHSDDSKKKERHIVTWSPEEDDILRKQISLQGTENWAIIASKF 60 61 NDKSTRQCRRRWYTYLNSDFKRGGWSPEEDTLLCEAQRLFGNRWTEIAKVVSGRTDNAVK 120 121 NRFTTLCKKRAKHEAMAKENRIACCVNSDNKRLLFPDGISTPLKAESESPLTKKMRRSHI 180 181 PNLTEIKSYGDRSHIKVESTMNQQRRHPFSVVAHNATSSDGTEEQKQIGNVKESDGEDKS 240 241 NQEVFLKKDDSKVTALMQQAELLSSLAQKVNADNTDQSMENAWKVLQDFLNKSKENDLFR 300 301 YGIPDIDFQLDEFKDLVEDLRSSNEDSQSSWRQPDLHDSPASSEYSSGSGSGSTIMTHPS 360 361 GDKTQQLMSDTQTTSHQQNGGELLQDNGIVSDATVEQVGLLSTGHDVLKNSNETVPIPGE 420 421 EEFNSPVQVTPLFRSLAAGIPSPQFSESERNFLLKTLGVESPSPYPSANPSQPPPCKRVL 480 481 LDSL |
| Interface Residues: | 64, 65, 66, 67, 69, 70, 73, 74, 75, 116, 117, 120, 121, 124, 125, 126 |
| 3D-footprint Homologues: | 2kdz_A, 1w0t_A, 5eyb_B, 6kks_A, 3osg_A, 1mse_C, 3zqc_A, 7xur_A |
| Binding Motifs: | M0513 hmymcACGCkCCwcy M0516 rraGGAGCGTdtd MA2029.1 mcACGCTCCTCcm MA2029.2 ACGCTCCTC |
| Binding Sites: | MA2029.1.1 MA2029.1.10 MA2029.1.11 MA2029.1.12 MA2029.1.13 MA2029.1.14 MA2029.1.15 MA2029.1.16 MA2029.1.17 MA2029.1.18 MA2029.1.19 MA2029.1.2 MA2029.1.20 MA2029.1.3 MA2029.1.4 MA2029.1.5 MA2029.1.6 MA2029.1.7 MA2029.1.8 MA2029.1.9 MA2029.2.1 / MA2029.2.4 MA2029.2.10 / MA2029.2.13 / MA2029.2.3 MA2029.2.11 MA2029.2.12 MA2029.2.14 / MA2029.2.7 MA2029.2.15 / MA2029.2.16 / MA2029.2.20 / MA2029.2.5 / MA2029.2.9 MA2029.2.17 MA2029.2.18 MA2029.2.19 MA2029.2.2 / MA2029.2.6 / MA2029.2.8 |
| Publications: | Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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